Mercurial > repos > galaxyp > maxquant

comparison test-data/03/config.yml @ 5:1cdde5989a2d draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 4e77eeda8a112fb50af00325a5164b986c16fc5c"
author galaxyp
date Wed, 06 May 2020 17:34:40 +0000
parents 009693badefc
children f2f79f0be7d1
comparison
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4:6fea360ba324 5:1cdde5989a2d
13 separateLfq: False 13 separateLfq: False
14 lfqStabilizeLargeRatios: True 14 lfqStabilizeLargeRatios: True
15 lfqRequireMsms: True 15 lfqRequireMsms: True
16 advancedSiteIntensities: True 16 advancedSiteIntensities: True
17 matchBetweenRuns: False 17 matchBetweenRuns: False
18 includeContaminants: True
19 quantMode: 1
20 restrictProteinQuantification: True
21 restrictMods: []
22 useCounterparts: True
18 paramGroups: 23 paramGroups:
19 - files: ['BSA_min_22.mzxml'] 24 - files: ['BSA_min_22.mzxml']
20 maxMissedCleavages: 1 25 maxMissedCleavages: 1
21 fixedModifications: [Carbamidomethyl (C)] 26 fixedModifications: [Carbamidomethyl (C)]
22 variableModifications: [Oxidation (M)] 27 variableModifications: [Oxidation (M)]
23 enzymes: [Trypsin/P] 28 enzymes: [Trypsin/P]
29 enzymeMode: 0
24 lfqMode: 1 30 lfqMode: 1
25 lfqSkipNorm: True 31 lfqSkipNorm: True
26 lfqMinEdgesPerNode: 3 32 lfqMinEdgesPerNode: 3
27 lfqAvEdgesPerNode: 6 33 lfqAvEdgesPerNode: 6
28 lfqMinRatioCount: 2 34 lfqMinRatioCount: 2