Mercurial > repos > galaxyp > maxquant

comparison test-data/02/config.yml @ 5:1cdde5989a2d draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 4e77eeda8a112fb50af00325a5164b986c16fc5c"
author galaxyp
date Wed, 06 May 2020 17:34:40 +0000
parents 009693badefc
children f2f79f0be7d1
comparison
equal deleted inserted replaced
4:6fea360ba324 5:1cdde5989a2d
11 separateLfq: False 11 separateLfq: False
12 lfqStabilizeLargeRatios: True 12 lfqStabilizeLargeRatios: True
13 lfqRequireMsms: True 13 lfqRequireMsms: True
14 advancedSiteIntensities: True 14 advancedSiteIntensities: True
15 matchBetweenRuns: False 15 matchBetweenRuns: False
16 includeContaminants: False
17 quantMode: 0
18 restrictProteinQuantification: True
19 restrictMods: [Pro5,Pro6]
20 useCounterparts: True
16 paramGroups: 21 paramGroups:
17 - files: ['BSA_min_23.mzXML'] 22 - files: ['BSA_min_23.mzXML']
18 maxMissedCleavages: 2 23 maxMissedCleavages: 2
19 fixedModifications: [] 24 fixedModifications: []
20 variableModifications: [Oxidation (M)] 25 variableModifications: [Oxidation (M)]
21 enzymes: [Trypsin/P] 26 enzymes: [Trypsin/P]
27 enzymeMode: 0
22 lcmsRunType: 'Reporter ion MS2' 28 lcmsRunType: 'Reporter ion MS2'
23 reporterMassTolerance: 0.003 29 reporterMassTolerance: 0.003
24 reporterPif: 0 30 reporterPif: 0.6
25 reporterFraction: 0 31 reporterFraction: 0
26 reporterBasePeakRatio: 0 32 reporterBasePeakRatio: 0
33 filterPif: False
27 isobaricLabels: 34 isobaricLabels:
28 - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True] 35 - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True]
29 - ['TMT2plex-Lys127','TMT2plex-Nter127',0.0,0.0,0.0,0.0,True] 36 - ['TMT2plex-Lys127','TMT2plex-Nter127',0.0,0.0,0.0,0.0,True]
30 - files: ['BSA_min_22.mzxml'] 37 - files: ['BSA_min_22.mzxml']
31 maxMissedCleavages: 2 38 maxMissedCleavages: 2
32 fixedModifications: [] 39 fixedModifications: []
33 variableModifications: [] 40 variableModifications: []
34 enzymes: [] 41 enzymes: []
42 enzymeMode: 0
35 lcmsRunType: 'Reporter ion MS2' 43 lcmsRunType: 'Reporter ion MS2'
36 reporterMassTolerance: 0.003 44 reporterMassTolerance: 0.003
37 reporterPif: 0 45 reporterPif: 0.8
38 reporterFraction: 0 46 reporterFraction: 0
39 reporterBasePeakRatio: 0 47 reporterBasePeakRatio: 0
48 filterPif: True
40 isobaricLabels: 49 isobaricLabels:
41 - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False] 50 - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False]
42 - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False] 51 - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False]
43 - [iTRAQ4plex-Lys116,iTRAQ4plex-Nter116,0,0,0,0,False] 52 - [iTRAQ4plex-Lys116,iTRAQ4plex-Nter116,0,0,0,0,False]
44 - [iTRAQ4plex-Lys117,iTRAQ4plex-Nter117,0,0,0,0,False] 53 - [iTRAQ4plex-Lys117,iTRAQ4plex-Nter117,0,0,0,0,False]