Mercurial > repos > galaxyp > maxquant

comparison test-data/03/config.yml @ 3:009693badefc draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author galaxyp
date Sat, 11 Apr 2020 15:48:19 +0000
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children 1cdde5989a2d
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2:33c911e66d8e 3:009693badefc
1
2 fastaFiles: [/tmp/tmpQsmPD9/files/7/b/e/dataset_7be42b54-5eac-4f1d-a6bb-0b85e8f1bd67.dat]
3 parseRules:
4 identifierParseRule: '^>.*\|(.*)\|.*$'
5 descriptionParseRule: '^>.*\|.*\|[^ ]+ (.*) OS.*$'
6 minUniquePeptides: 1
7 minPepLen: 7
8 maxPeptideMass: 4600
9 calcPeakProperties: False
10 writeMzTab: False
11 ibaq: True
12 ibaqLogFit: False
13 separateLfq: False
14 lfqStabilizeLargeRatios: True
15 lfqRequireMsms: True
16 advancedSiteIntensities: True
17 matchBetweenRuns: False
18 paramGroups:
19 - files: ['BSA_min_22.mzxml']
20 maxMissedCleavages: 1
21 fixedModifications: [Carbamidomethyl (C)]
22 variableModifications: [Oxidation (M)]
23 enzymes: [Trypsin/P]
24 lfqMode: 1
25 lfqSkipNorm: True
26 lfqMinEdgesPerNode: 3
27 lfqAvEdgesPerNode: 6
28 lfqMinRatioCount: 2
29