Mercurial > repos > galaxyp > maldi_quant_peak_detection
annotate test-data/peak_detection5.imzml @ 7:4bd085117204 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
| author | galaxyp |
|---|---|
| date | Sat, 04 Mar 2023 19:13:03 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
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7
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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1 <?xml version="1.0" encoding="utf-8"?> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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2 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="out" version="1.1.0"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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3 <cvList count="2"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.44.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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5 <cv id="UO" fullName="Unit Ontology" version="12:10:2012" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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changeset
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6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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7 </cvList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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8 <fileDescription> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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9 <fileContent> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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11 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{61260965-d7bf-4d32-bb70-46172bff6917}"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
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12 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="68ad24ff78b7c9e8fc926eaf891199cfd7cb7f77"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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13 <cvParam cvRef="IMS" accession="IMS:1000031" name="processed"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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14 <userParam name="MALDIquantForeign" value="MALDIquant object(s) exported to mzML"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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15 </fileContent> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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16 <sourceFileList count="1"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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17 <sourceFile id="SF1" location="/tmp/tmpequnedvd/job_working_directory/000/8/working" name="infile.imzML"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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18 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="f213bd84091f284d1983d1b72dc480a008619b43"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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19 </sourceFile> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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20 </sourceFileList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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21 </fileDescription> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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22 <softwareList count="1"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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23 <software id="MALDIquantForeign" version="0.13"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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24 </softwareList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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25 <referenceableParamGroupList count="2"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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26 <referenceableParamGroup id="mzArray"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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27 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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28 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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29 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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30 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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31 </referenceableParamGroup> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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32 <referenceableParamGroup id="intensityArray"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
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33 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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34 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
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35 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
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36 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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changeset
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37 </referenceableParamGroup> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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38 </referenceableParamGroupList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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39 <scanSettingsList count="1"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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40 <scanSettings id="scansetting1"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
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41 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
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42 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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43 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="300" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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44 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="300" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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45 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="100" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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46 <cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="100" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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47 </scanSettings> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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48 </scanSettingsList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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49 <instrumentConfigurationList count="1"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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50 <instrumentConfiguration id="IC0"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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51 </instrumentConfigurationList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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52 <dataProcessingList count="1"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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53 <dataProcessing id="export"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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54 <processingMethod order="1" softwareRef="MALDIquantForeign"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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55 <userParam name="MALDIquant object(s) exported to mzML" value=""/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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56 </processingMethod> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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57 </dataProcessing> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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58 </dataProcessingList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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59 <run id="run0" defaultInstrumentConfigurationRef="IC0"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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60 <spectrumList count="3" defaultDataProcessingRef="export"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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61 <spectrum index="0" id="Spectrum=3" defaultArrayLength="36"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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62 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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63 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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64 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="1199.57592773438" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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65 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1354.47863769531" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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66 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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67 <scanList count="1"> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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68 <scan> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
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69 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
70 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
71 </scan> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
72 </scanList> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
73 <binaryDataArrayList count="2"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
74 <binaryDataArray encodedLength="0"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
75 <referenceableParamGroupRef ref="mzArray"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
76 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
77 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
78 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="288"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
79 <binary/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
80 </binaryDataArray> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
81 <binaryDataArray encodedLength="0"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
82 <referenceableParamGroupRef ref="intensityArray"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
83 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="304"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
84 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
85 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="288"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
86 <binary/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
87 </binaryDataArray> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
88 </binaryDataArrayList> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
89 </spectrum> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
90 <spectrum index="1" id="Spectrum=5" defaultArrayLength="36"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
91 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
92 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
93 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="1199.57592773438" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
94 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1354.47863769531" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
95 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
96 <scanList count="1"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
97 <scan> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
98 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
99 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
100 </scan> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
101 </scanList> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
102 <binaryDataArrayList count="2"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
103 <binaryDataArray encodedLength="0"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
104 <referenceableParamGroupRef ref="mzArray"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
105 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="592"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
106 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
107 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="288"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
108 <binary/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
109 </binaryDataArray> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
110 <binaryDataArray encodedLength="0"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
111 <referenceableParamGroupRef ref="intensityArray"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
112 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="880"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
113 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
114 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="288"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
115 <binary/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
116 </binaryDataArray> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
117 </binaryDataArrayList> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
118 </spectrum> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
119 <spectrum index="2" id="Spectrum=7" defaultArrayLength="36"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
120 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
121 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
122 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="1199.57592773438" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
123 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1354.47863769531" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
124 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
125 <scanList count="1"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
126 <scan> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
127 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
128 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
129 </scan> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
130 </scanList> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
131 <binaryDataArrayList count="2"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
132 <binaryDataArray encodedLength="0"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
133 <referenceableParamGroupRef ref="mzArray"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
134 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1168"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
135 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
136 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="288"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
137 <binary/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
138 </binaryDataArray> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
139 <binaryDataArray encodedLength="0"> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
140 <referenceableParamGroupRef ref="intensityArray"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
141 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1456"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
142 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36"/> |
|
4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
parents:
diff
changeset
|
143 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="288"/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
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144 <binary/> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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145 </binaryDataArray> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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diff
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146 </binaryDataArrayList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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147 </spectrum> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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148 </spectrumList> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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149 </run> |
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4bd085117204
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f1e1cd260ef2884d0ba12e2b614df3c72d0934dc
galaxyp
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150 </mzML> |