# HG changeset patch
# User galaxyp
# Date 1431368757 14400
# Node ID 8559c361b8a1e35605542ff5a3af1cf55433f8ce
# Parent  25f43048bff37c6ce6df71a40c424479779e433e
Uploaded

diff -r 25f43048bff3 -r 8559c361b8a1 feature_alignment.xml
--- a/feature_alignment.xml	Mon May 11 14:20:47 2015 -0400
+++ b/feature_alignment.xml	Mon May 11 14:25:57 2015 -0400
@@ -42,9 +42,9 @@
         <param name="max_fdr_quality" type="text" default="-1.0"
             label="Extension score cutoff"
             help="During the extension phase of the algorithm, peakgroups of this quality will still be considered for alignment (in FDR) - it is possible to give a range in the format lower,higher+stepsize,stepsize - e.g. 0,0.31,0.01 (-1 will set it to fdr_cutoff) (--max_fdr_quality)"/>
-        <param name="max_rt_diff" type="integer" default="30"
+        <param name="max_rt_diff" type="integer" value="30" default="30"
             label="Maximal difference in RT for two aligned features" help="(--max_rt_diff)"/>
-        <param name="iso_max_rt_diff" type="text" default="10"
+        <param name="iso_max_rt_diff" type="text" value="10" default="10"
             label="Maximal difference in RT for two isotopic channels in the same run" help="(--iso_max_rt_diff)" />
         <param name="frac_selected" type="float" value="0.0" min="0" max="1"
             label="Do not write peakgroup if selected in less than this fraction of runs" help="(--frac_selected)"/>