Mercurial > repos > galaxyp > feature_alignment
comparison feature_alignment.xml @ 1:25f43048bff3 draft
Uploaded
| author | galaxyp |
|---|---|
| date | Mon, 11 May 2015 14:20:47 -0400 |
| parents | 7b4d70c9a139 |
| children | 8559c361b8a1 |
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| 0:7b4d70c9a139 | 1:25f43048bff3 |
|---|---|
| 46 label="Maximal difference in RT for two aligned features" help="(--max_rt_diff)"/> | 46 label="Maximal difference in RT for two aligned features" help="(--max_rt_diff)"/> |
| 47 <param name="iso_max_rt_diff" type="text" default="10" | 47 <param name="iso_max_rt_diff" type="text" default="10" |
| 48 label="Maximal difference in RT for two isotopic channels in the same run" help="(--iso_max_rt_diff)" /> | 48 label="Maximal difference in RT for two isotopic channels in the same run" help="(--iso_max_rt_diff)" /> |
| 49 <param name="frac_selected" type="float" value="0.0" min="0" max="1" | 49 <param name="frac_selected" type="float" value="0.0" min="0" max="1" |
| 50 label="Do not write peakgroup if selected in less than this fraction of runs" help="(--frac_selected)"/> | 50 label="Do not write peakgroup if selected in less than this fraction of runs" help="(--frac_selected)"/> |
| 51 | |
| 52 <param name="method" type="select" | 51 <param name="method" type="select" |
| 53 label="Which method to use for the clustering" | 52 label="Which method to use for the clustering" |
| 54 help="Note that the MST options will perform a local, MST guided alignment while the other options will use a reference-guided alignment. The global option will also move peaks which are below the selected FDR threshold. (--method)" /> | 53 help="Note that the MST options will perform a local, MST guided alignment while the other options will use a reference-guided alignment. The global option will also move peaks which are below the selected FDR threshold. (--method)" > |
| 55 <option value='best_overall' selected="True">best_overall</option> | 54 <option value='best_overall' selected="True">best_overall</option> |
| 56 <option value='best_cluster_score'>best_cluster_score</option> | 55 <option value='best_cluster_score'>best_cluster_score</option> |
| 57 <option value='global_best_cluster_score'>global_best_cluster_score</option> | 56 <option value='global_best_cluster_score'>global_best_cluster_score</option> |
| 58 <option value='global_best_overall'>global_best_overall</option> | 57 <option value='global_best_overall'>global_best_overall</option> |
| 59 <option value='LocalMST'>LocalMST</option> | 58 <option value='LocalMST'>LocalMST</option> |