Mercurial > repos > galaxyp > encyclopedia_prosit_csv_to_library

diff encyclopedia_prosit_csv_to_library.xml @ 1:c0a3bd187e2b draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit d94002fc79f552c8a64ffca86298396b1568df97"
author galaxyp
date Mon, 14 Sep 2020 16:58:50 +0000
parents 4402e78f068d
children 76133c933d92
line wrap: on
line diff
--- a/encyclopedia_prosit_csv_to_library.xml	Fri Jun 19 14:03:47 2020 +0000
+++ b/encyclopedia_prosit_csv_to_library.xml	Mon Sep 14 16:58:50 2020 +0000
@@ -4,11 +4,12 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
-    <command detect_errors="exit_code"><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
         EncyclopeDIA -convert -prositcsvtolibrary
+        -numberOfThreadsUsed "\${GALAXY_SLOTS:-4}"
         -i '$i'
         -f '$f'
-	-o '$output'
+        -o '$output'
         #if $istest == 'yes'
         && sqlite3 -readonly '$output' 'select distinct ProteinAccession from peptidetoprotein;' > '$test_output'
         #end if