Mercurial > repos > galaxyp > encyclopedia_fasta_to_prosit_csv

comparison encyclopedia_fasta_to_prosit_csv.xml @ 2:4419b0f9bf79 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 0bb79ebbaf73fe6e902f6ef20cc9c9741063bf34
author galaxyp
date Tue, 17 May 2022 14:50:47 +0000
parents 1571f129b9a0
children
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1:1571f129b9a0 2:4419b0f9bf79
2 <description>Create Prosit CSV Input From a Protein FASTA</description> 2 <description>Create Prosit CSV Input From a Protein FASTA</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 EncyclopeDIA -convert -fastatoprositcsv 8 EncyclopeDIA -convert -fastatoprositcsv
9 -i '$i' 9 -i '$i'
10 -numberOfThreadsUsed "\${GALAXY_SLOTS:-4}" 10 -numberOfThreadsUsed "\${GALAXY_SLOTS:-4}"
11 -minCharge $minCharge 11 -minCharge $minCharge
12 -maxCharge $maxCharge 12 -maxCharge $maxCharge