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comparison macros.xml @ 1:8f2555d3687f draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 7567c513925da467828c9f0dc1746a16b4adb062
author galaxyp
date Fri, 20 Sep 2019 11:01:22 -0400
parents 39618cb4669f
children
comparison
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0:39618cb4669f 1:8f2555d3687f
18 #set $l_name = None 18 #set $l_name = None
19 #set $t_name = None 19 #set $t_name = None
20 </token> 20 </token>
21 21
22 <xml name="scan_input"> 22 <xml name="scan_input">
23 <param argument="-i" type="data" format="mzml" label="Spectrum file, .mzml or .dia"/> 23 <param argument="-i" type="data" format="imzml,mzml" label="Spectrum file, .mzml or .dia"/>
24 </xml> 24 </xml>
25 <token name="@LINK_SCAN_INPUT@"><![CDATA[ 25 <token name="@LINK_SCAN_INPUT@"><![CDATA[
26 #set $i_name = $i.display_name 26 #set $i_name = $i.display_name
27 ln -s '$i' '$i_name' && 27 ln -s '$i' '$i_name' &&
28 ]]></token> 28 ]]></token>
29 <token name="@SCAN_INPUT@"> 29 <token name="@SCAN_INPUT@">
30 -i '$i_name' 30 -i '$i_name'
31 </token> 31 </token>
32 32
33 <xml name="scan_inputs"> 33 <xml name="scan_inputs">
34 <param argument="-i" type="data" format="mzml" multiple="true" label="Spectrum file, .mzml or .dia"/> 34 <param argument="-i" type="data" format="imzml,mzml" multiple="true" label="Spectrum file, .mzml or .dia"/>
35 </xml> 35 </xml>
36 <token name="@LINK_SCAN_INPUTS@"><![CDATA[ 36 <token name="@LINK_SCAN_INPUTS@"><![CDATA[
37 #set $inputs_dir = 'inputs' 37 #set $inputs_dir = 'inputs'
38 mkdir -p $inputs_dir && 38 mkdir -p $inputs_dir &&
39 #for $sf in $i 39 #for $sf in $i