Mercurial > repos > galaxyp > eggnog_mapper

comparison eggnog_mapper.xml @ 3:dc2b68cb88cb draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 7764444d4c16da8ce25453c420ca2d821a5f2c21
author galaxyp
date Fri, 10 Nov 2017 02:49:25 -0500
parents 17a46ee51928
children 44f3e55293d8
comparison
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2:17a46ee51928 3:dc2b68cb88cb
369 </actions> 369 </actions>
370 </data> 370 </data>
371 <data name="annotations" format="tabular" label="${tool.name} on ${on_string}: ${db.database}.annotations" from_work_dir="results.emapper.annotations"> 371 <data name="annotations" format="tabular" label="${tool.name} on ${on_string}: ${db.database}.annotations" from_work_dir="results.emapper.annotations">
372 <filter>not output_options['no_annot']</filter> 372 <filter>not output_options['no_annot']</filter>
373 <actions> 373 <actions>
374 <action name="column_names" type="metadata" default="query_name,seed_eggNOG_ortholog,seed_ortholog_evalue,seed_ortholog_score,predicted_gene_name,GO_terms,KEGG_pathways,Annotation_tax_scope,Matching_OGs,best_OG|evalue|score,COG,functional,categories,eggNOG_HMM_model_annotation"/> 374 <action name="column_names" type="metadata" default="query_name,seed_eggNOG_ortholog,seed_ortholog_evalue,seed_ortholog_score,predicted_gene_name,GO_terms,KEGG_KO,BiGG_Reactions,Annotation_tax_scope,Matching_OGs,best_OG|evalue|score,COG_functional_categories,eggNOG_HMM_model_annotation"/>
375 </actions> 375 </actions>
376 </data> 376 </data>
377 <data name="hmm_hits" format="tabular" label="${tool.name} on ${on_string}: ${db.database}.hmm_hits" from_work_dir="results.emapper.hmm_hits"> 377 <data name="hmm_hits" format="tabular" label="${tool.name} on ${on_string}: ${db.database}.hmm_hits" from_work_dir="results.emapper.hmm_hits">
378 <filter>db['mode'] == 'hmmer'</filter> 378 <filter>db['mode'] == 'hmmer'</filter>
379 <actions> 379 <actions>