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comparison eggnog_mapper.xml @ 9:bb2fd26a081d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 622d8d475193f3717d26f45fd7c8f5868e9a2d0d
author galaxyp
date Tue, 07 Jun 2022 14:56:07 +0000
parents cc203b7580e7
children 3d30526975d7
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equal deleted inserted replaced
8:cc203b7580e7 9:bb2fd26a081d
1 <tool id="eggnog_mapper" name="eggNOG Mapper" version="@VERSION@+galaxy1"> 1 <tool id="eggnog_mapper" name="eggNOG Mapper" version="@VERSION@+galaxy2">
2 <description>functional sequence annotation by orthology</description> 2 <description>functional sequence annotation by orthology</description>
3 <macros> 3 <macros>
4 <import>eggnog_macros.xml</import> 4 <import>eggnog_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
79 </when> 79 </when>
80 <when value="genome"> 80 <when value="genome">
81 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false" 81 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false"
82 label="Translate predicted CDS from blastx hits to proteins"/> 82 label="Translate predicted CDS from blastx hits to proteins"/>
83 <param argument="--genepred" type="select" label="Type of sequences"> 83 <param argument="--genepred" type="select" label="Type of sequences">
84 <option value="search" selected="true">Inferred from Diamond/MMseqs2 blastx hits</option> 84 <option value="search">Inferred from Diamond/MMseqs2 blastx hits</option>
85 <option value="prodigal">Performed using Prodigal</option> 85 <option value="prodigal" selected="true">Performed using Prodigal</option>
86 </param> 86 </param>
87 </when> 87 </when>
88 <when value="metagenome"> 88 <when value="metagenome">
89 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false" 89 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false"
90 label="Translate predicted CDS from blastx hits to proteins"/> 90 label="Translate predicted CDS from blastx hits to proteins"/>
91 <param argument="--genepred" type="select" label="Type of sequences"> 91 <param argument="--genepred" type="select" label="Type of sequences">
92 <option value="search" selected="true">Inferred from Diamond/MMseqs2 blastx hits</option> 92 <option value="search">Inferred from Diamond/MMseqs2 blastx hits</option>
93 <option value="prodigal">Performed using Prodigal</option> 93 <option value="prodigal" selected="true">Performed using Prodigal</option>
94 </param> 94 </param>
95 </when> 95 </when>
96 </conditional> 96 </conditional>
97 <param name="eggnog_data" type="select" label="Version of eggNOG Database"> 97 <param name="eggnog_data" type="select" label="Version of eggNOG Database">
98 <options from_data_table="eggnog_mapper_db_versioned"> 98 <options from_data_table="eggnog_mapper_db_versioned">