Mercurial > repos > galaxyp > data_manager_eggnog_mapper

comparison data_manager_conf.xml @ 1:a0625e4f566b draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author galaxyp
date Fri, 19 Feb 2021 18:51:53 +0000
parents bcb556946648
children
comparison
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0:bcb556946648 1:a0625e4f566b
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_eggnog.xml" id="data_manager_eggnog" > 3 <data_manager tool_file="data_manager/data_manager_eggnog.xml" id="data_manager_eggnog" >
4 <data_table name="eggnog_mapper_db"> <!-- Defines a Data Table to be modified. --> 4 <data_table name="eggnog_mapper_db_versioned"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool --> 5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="path" output_ref="out_file" > 8 <column name="path" output_ref="out_file" >
9 <move type="directory" relativize_symlinks="True"> 9 <move type="directory" relativize_symlinks="True">
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">eggnog_data/${value}</target> 10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">eggnog_data/${value}</target>
11 </move> 11 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/eggnog_data/${value}</value_translation> 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/eggnog_data/${value}</value_translation>
13 <value_translation type="function">abspath</value_translation> 13 <value_translation type="function">abspath</value_translation>
14 </column> 14 </column>
15 </output> 15 <column name="version" />
16 </data_table>
17 <data_table name="eggnog_mapper_hmm_dbs"> <!-- Defines a Data Table to be modified. -->
18 <output> <!-- Handle the output of the Data Manager Tool -->
19 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
20 <column name="db_version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
23 <column name="path" /> <!-- columns that are going to be specified by the Data Manager Tool -->
24 </output> 16 </output>
25 </data_table> 17 </data_table>
26 </data_manager> 18 </data_manager>
27 </data_managers> 19 </data_managers>