Mercurial > repos > galaxyp > data_manager_custom
comparison data_manager/customProDB_annotation.xml @ 0:3c2c36beddb1 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/data_manager_customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
| author | galaxyp |
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| date | Fri, 15 Jan 2016 15:52:56 -0500 |
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| -1:000000000000 | 0:3c2c36beddb1 |
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| 1 <tool id="custom_pro_db_annotation_data_manager" name="CustomProDB Annotation" tool_type="manage_data" version="0.0.1"> | |
| 2 <description>builder</description> | |
| 3 <command interpreter="Rscript --vanilla">customProDB_annotation.R | |
| 4 --outputFile "${out_file}" | |
| 5 --dbkey "${dbkey}" | |
| 6 2>&1 | |
| 7 </command> | |
| 8 <stdio> | |
| 9 <exit_code range=":-1" /> | |
| 10 <exit_code range="1:" /> | |
| 11 </stdio> | |
| 12 <inputs> | |
| 13 <!--<param name="all_fasta_source" type="select" label="Source FASTA Sequence"> | |
| 14 <options from_data_table="all_fasta"/> | |
| 15 </param> | |
| 16 <param type="text" name="sequence_name" value="" label="Name of sequence" /> | |
| 17 <param type="text" name="sequence_id" value="" label="ID for sequence" />--> | |
| 18 <param type="text" name="dbkey" value="" label="UCSC dbKey for reference genome" /> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data name="out_file" format="data_manager_json"/> | |
| 22 </outputs> | |
| 23 | |
| 24 <help> | |
| 25 | |
| 26 .. class:: infomark | |
| 27 | |
| 28 **Notice:** If you leave name, description, or id blank, it will be generated automatically. | |
| 29 | |
| 30 </help> | |
| 31 </tool> |