Mercurial > repos > galaxyp > custom_pro_db_annotation_data_manager

comparison data_manager/customProDB_annotation.R @ 9:9fec6c7f46eb draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 7115cf54f290b51b6a791f9ae288dd907a31fb0a
author galaxyp
date Fri, 13 Jan 2017 12:18:39 -0500
parents f4badf0bf23a
children 63c48a6eddb6
comparison
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8:f4badf0bf23a 9:9fec6c7f46eb
48 else 48 else
49 { 49 {
50 dbsnp = NULL 50 dbsnp = NULL
51 } 51 }
52 52
53 use_cosmic = NULL 53 use_cosmic = FALSE
54 if (length(cosmic) > 0) 54 if (length(cosmic) > 0)
55 { 55 {
56 if (grepl("^hg", dbkey)) 56 if (grepl("^hg", dbkey))
57 { 57 {
58 use_cosmic = TRUE 58 use_cosmic = TRUE