Mercurial > repos > galaxyp > custom_pro_db_annotation_data_manager
comparison data_manager/customProDB_annotation.xml @ 0:663ee21a8609 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/data_manager_customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
author | galaxyp |
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date | Thu, 21 Jan 2016 18:19:52 -0500 |
parents | |
children | 4c77cf5a2977 |
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-1:000000000000 | 0:663ee21a8609 |
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1 <tool id="custom_pro_db_annotation_data_manager" name="CustomProDB Annotation" tool_type="manage_data" version="0.0.1"> | |
2 <description>builder</description> | |
3 <command interpreter="Rscript --vanilla">customProDB_annotation.R | |
4 --outputFile "${out_file}" | |
5 --dbkey "${dbkey}" | |
6 2>&1 | |
7 </command> | |
8 <stdio> | |
9 <exit_code range=":-1" /> | |
10 <exit_code range="1:" /> | |
11 </stdio> | |
12 <inputs> | |
13 <!--<param name="all_fasta_source" type="select" label="Source FASTA Sequence"> | |
14 <options from_data_table="all_fasta"/> | |
15 </param> | |
16 <param type="text" name="sequence_name" value="" label="Name of sequence" /> | |
17 <param type="text" name="sequence_id" value="" label="ID for sequence" />--> | |
18 <param type="text" name="dbkey" value="" label="UCSC dbKey for reference genome" /> | |
19 </inputs> | |
20 <outputs> | |
21 <data name="out_file" format="data_manager_json"/> | |
22 </outputs> | |
23 | |
24 <help> | |
25 | |
26 .. class:: infomark | |
27 | |
28 **Notice:** If you leave name, description, or id blank, it will be generated automatically. | |
29 | |
30 </help> | |
31 </tool> |