comparison data_manager/customProDB_annotation.xml @ 0:663ee21a8609 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/data_manager_customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
author galaxyp
date Thu, 21 Jan 2016 18:19:52 -0500
parents
children 4c77cf5a2977
comparison
equal deleted inserted replaced
-1:000000000000 0:663ee21a8609
1 <tool id="custom_pro_db_annotation_data_manager" name="CustomProDB Annotation" tool_type="manage_data" version="0.0.1">
2 <description>builder</description>
3 <command interpreter="Rscript --vanilla">customProDB_annotation.R
4 --outputFile "${out_file}"
5 --dbkey "${dbkey}"
6 2&gt;&amp;1
7 </command>
8 <stdio>
9 <exit_code range=":-1" />
10 <exit_code range="1:" />
11 </stdio>
12 <inputs>
13 <!--<param name="all_fasta_source" type="select" label="Source FASTA Sequence">
14 <options from_data_table="all_fasta"/>
15 </param>
16 <param type="text" name="sequence_name" value="" label="Name of sequence" />
17 <param type="text" name="sequence_id" value="" label="ID for sequence" />-->
18 <param type="text" name="dbkey" value="" label="UCSC dbKey for reference genome" />
19 </inputs>
20 <outputs>
21 <data name="out_file" format="data_manager_json"/>
22 </outputs>
23
24 <help>
25
26 .. class:: infomark
27
28 **Notice:** If you leave name, description, or id blank, it will be generated automatically.
29
30 </help>
31 </tool>