Mercurial > repos > galaxyp > custom_pro_db

comparison customProDB.xml @ 10:ed65d110c1b5 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/customProDB commit 98f3323d4b92a4a3668788b3e1bad1a6529fd6df-dirty
author galaxyp
date Wed, 08 Jun 2016 15:02:58 -0400
parents 328a1e3b5261
children 982fb2cde6c5
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9:328a1e3b5261 10:ed65d110c1b5
60 </param>--> 60 </param>-->
61 <param name="vcfInput" type="data" format="vcf" label="VCF file"> 61 <param name="vcfInput" type="data" format="vcf" label="VCF file">
62 <validator type="unspecified_build" /> 62 <validator type="unspecified_build" />
63 <validator message="Sequences are not currently available for the specified build." metadata_column="1" metadata_name="dbkey" table_name="customProDB" type="dataset_metadata_in_data_table" /> 63 <validator message="Sequences are not currently available for the specified build." metadata_column="1" metadata_name="dbkey" table_name="customProDB" type="dataset_metadata_in_data_table" />
64 </param> 64 </param>
65 <param name="labelrsid" type="boolean" value="" label="Annotate SNPs with rsid from dbSNP (select organisms only)" /> 65 <param name="dbsnpInCoding" type="boolean" value="" label="Annotate SNPs with rsid from dbSNP (select organisms only)" />
66 <param name="cosmic" type="boolean" value="" label="Annotate somatic SNPs from COSMIC (human only)" /> 66 <param name="cosmic" type="boolean" value="" label="Annotate somatic SNPs from COSMIC (human only)" />
67 </when> 67 </when>
68 <when value="history"> 68 <when value="history">
69 <param name="exonAnno" type="data" format="RData" metadata_name="dbkey" help="A dataframe of exon annotations in an RData file" label="Exon Annotations" /> 69 <param name="exonAnno" type="data" format="RData" metadata_name="dbkey" help="A dataframe of exon annotations in an RData file" label="Exon Annotations" />
70 <param name="proteinSeq" type="data" format="RData" metadata_name="dbkey" help="A dataframe containing protein ids and protein sequences in an RData file" label="Protein Sequences" /> 70 <param name="proteinSeq" type="data" format="RData" metadata_name="dbkey" help="A dataframe containing protein ids and protein sequences in an RData file" label="Protein Sequences" />