Mercurial > repos > galaxyp > custom_pro_db

comparison customProDB.xml @ 2:e6f488178a45 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
author galaxyp
date Thu, 14 Jan 2016 18:12:22 -0500
parents 0d9ce24ea038
children 7e078d4e40f8
comparison
equal deleted inserted replaced
1:0d9ce24ea038 2:e6f488178a45
32 <validator type="empty_field" message="This field is required."/> 32 <validator type="empty_field" message="This field is required."/>
33 </param> 33 </param>
34 <param name="vcfInput" type="data" format="vcf" help="A VCF file to create variant proteins based on individual variation." label="Input Variant Calls"> 34 <param name="vcfInput" type="data" format="vcf" help="A VCF file to create variant proteins based on individual variation." label="Input Variant Calls">
35 <validator type="empty_field" message="This field is required."/> 35 <validator type="empty_field" message="This field is required."/>
36 </param> 36 </param>
37 <section name="optionalUserInput" label="Override Default Exon Annotation and Coding Sequences"> 37 <conditional name="optionalUserInput">
38 <param name="exonAnno" type="data" format="RData" help="A dataframe of exon annotations in an RData file" label="Exon Annotations" optional="true" /> 38 <param name="optionalUserInputCondition" type="boolean" label="Override Default Exon Annotation and Coding Sequences" />
39 <param name="proteinSeq" type="data" format="RData" help="A dataframe containing protein ids and protein sequences in an RData file" label="Protein Sequences" optional="true" /> 39 <when value="true">
40 <param name="proCodingSeq" type="data" format="RData" help="A dataframe cotaining coding sequences for each protein in an RData file" label="Protein Coding Sequences" optional="true" /> 40 <param name="exonAnno" type="data" format="RData" help="A dataframe of exon annotations in an RData file" label="Exon Annotations" optional="true" />
41 <param name="header" type="data" format="txt" help="A text file of SAM headers to include in the output file, usually corresponding to the exon and coding sequences used." label="SAM Headers" optional="true" /> 41 <param name="proteinSeq" type="data" format="RData" help="A dataframe containing protein ids and protein sequences in an RData file" label="Protein Sequences" optional="true" />
42 </section> 42 <param name="proCodingSeq" type="data" format="RData" help="A dataframe cotaining coding sequences for each protein in an RData file" label="Protein Coding Sequences" optional="true" />
43 </when>
44 <when value="false">
45 </when>
46 </conditional>
43 </inputs> 47 </inputs>
44 <outputs> 48 <outputs>
45 <data format="fasta" name="output" label="${input.name.rsplit('.',1)[0]}.fasta"/> 49 <data format="fasta" name="output" label="${input.name.rsplit('.',1)[0]}.fasta"/>
46 </outputs> 50 </outputs>
47 <!--<tests> 51 <!--<tests>