Mercurial > repos > galaxyp > custom_pro_db

comparison customProDB.xml @ 13:37cd89a40cea draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 4bb5b663989d5f04e8fb74b111456f16d6edaa66
author galaxyp
date Tue, 14 Mar 2017 14:14:25 -0400
parents 2656b09d2046
children bc10f130dbec
comparison
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12:2656b09d2046 13:37cd89a40cea
1 <tool id="custom_pro_db" name="CustomProDB" version="1.14.0"> 1 <tool id="custom_pro_db" name="CustomProDB" version="1.14.0">
2 <description>Generate protein FASTAs from exosome or transcriptome data</description> 2 <description>Generate protein FASTAs from exosome or transcriptome data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.14.0">bioconductor-customprodb</requirement> 4 <requirement type="package" version="1.14.0">bioconductor-customprodb</requirement>
5 <requirement type="package" version="1.18.0">bioconductor-rgalaxy</requirement>
5 </requirements> 6 </requirements>
6 <stdio> 7 <stdio>
7 <exit_code range="1:" level="fatal" description="Job Failed" /> 8 <exit_code range="1:" level="fatal" description="Job Failed" />
8 </stdio> 9 </stdio>
9 <command><![CDATA[ 10 <command><![CDATA[
104 <output name="output_rpkm" file="test_rpkm.fasta" /> 105 <output name="output_rpkm" file="test_rpkm.fasta" />
105 <output name="output_snv" file="test_snv.fasta" /> 106 <output name="output_snv" file="test_snv.fasta" />
106 <output name="output_indel" file="test_indel.fasta" /> 107 <output name="output_indel" file="test_indel.fasta" />
107 </test> 108 </test>
108 </tests> 109 </tests>
109 <help><![CDATA[ 110 <help>
110 **Description** 111 **Description**
111 112
112 Generate protein FASTAs from exosome or transcriptome data (in the form of BAM files). 113 Generate protein FASTAs from exosome or transcriptome data (in the form of BAM files). </help>
113
114 ]]></help>
115 <citations> 114 <citations>
116 <citation type="doi">10.1093/bioinformatics/btt543</citation> 115 <citation type="doi">10.1093/bioinformatics/btt543</citation>
117 <citation type="bibtex">@misc{toolsGalaxyP, author = {Chambers MC, et al.}, title = {Galaxy Proteomics Tools}, publisher = {GitHub}, journal = {GitHub 116 <citation type="bibtex">@misc{toolsGalaxyP, author = {Chambers MC, et al.}, title = {Galaxy Proteomics Tools}, publisher = {GitHub}, journal = {GitHub
118 repository}, 117 repository},
119 year = {2017}, url = {https://github.com/galaxyproteomics/tools-galaxyp}}</citation> <!-- TODO: fix substitution of commit ", commit = 118 year = {2017}, url = {https://github.com/galaxyproteomics/tools-galaxyp}}</citation> <!-- TODO: fix substitution of commit ", commit =