Mercurial > repos > galaxyp > custom_pro_db
comparison customProDB.xml @ 13:37cd89a40cea draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 4bb5b663989d5f04e8fb74b111456f16d6edaa66
author | galaxyp |
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date | Tue, 14 Mar 2017 14:14:25 -0400 |
parents | 2656b09d2046 |
children | bc10f130dbec |
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12:2656b09d2046 | 13:37cd89a40cea |
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1 <tool id="custom_pro_db" name="CustomProDB" version="1.14.0"> | 1 <tool id="custom_pro_db" name="CustomProDB" version="1.14.0"> |
2 <description>Generate protein FASTAs from exosome or transcriptome data</description> | 2 <description>Generate protein FASTAs from exosome or transcriptome data</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="1.14.0">bioconductor-customprodb</requirement> | 4 <requirement type="package" version="1.14.0">bioconductor-customprodb</requirement> |
5 <requirement type="package" version="1.18.0">bioconductor-rgalaxy</requirement> | |
5 </requirements> | 6 </requirements> |
6 <stdio> | 7 <stdio> |
7 <exit_code range="1:" level="fatal" description="Job Failed" /> | 8 <exit_code range="1:" level="fatal" description="Job Failed" /> |
8 </stdio> | 9 </stdio> |
9 <command><![CDATA[ | 10 <command><![CDATA[ |
104 <output name="output_rpkm" file="test_rpkm.fasta" /> | 105 <output name="output_rpkm" file="test_rpkm.fasta" /> |
105 <output name="output_snv" file="test_snv.fasta" /> | 106 <output name="output_snv" file="test_snv.fasta" /> |
106 <output name="output_indel" file="test_indel.fasta" /> | 107 <output name="output_indel" file="test_indel.fasta" /> |
107 </test> | 108 </test> |
108 </tests> | 109 </tests> |
109 <help><![CDATA[ | 110 <help> |
110 **Description** | 111 **Description** |
111 | 112 |
112 Generate protein FASTAs from exosome or transcriptome data (in the form of BAM files). | 113 Generate protein FASTAs from exosome or transcriptome data (in the form of BAM files). </help> |
113 | |
114 ]]></help> | |
115 <citations> | 114 <citations> |
116 <citation type="doi">10.1093/bioinformatics/btt543</citation> | 115 <citation type="doi">10.1093/bioinformatics/btt543</citation> |
117 <citation type="bibtex">@misc{toolsGalaxyP, author = {Chambers MC, et al.}, title = {Galaxy Proteomics Tools}, publisher = {GitHub}, journal = {GitHub | 116 <citation type="bibtex">@misc{toolsGalaxyP, author = {Chambers MC, et al.}, title = {Galaxy Proteomics Tools}, publisher = {GitHub}, journal = {GitHub |
118 repository}, | 117 repository}, |
119 year = {2017}, url = {https://github.com/galaxyproteomics/tools-galaxyp}}</citation> <!-- TODO: fix substitution of commit ", commit = | 118 year = {2017}, url = {https://github.com/galaxyproteomics/tools-galaxyp}}</citation> <!-- TODO: fix substitution of commit ", commit = |