--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/msgf.ms2	Tue May 08 14:16:45 2018 -0400
@@ -0,0 +1,2878 @@
+H	CreationDate	Mon May  7 19:27:23 2018
+H	Extractor	BlibToMs2
+H	Comment	Library	/panfs/roc/groups/7/galaxy/galaxy/tmp/bibliospec/msgf.blib
+S	1	1	784.865
+Z	2	1550.64
+D	seq	FKWNGTDTNSAAEK
+D	modified seq	FKWNGTDTNSAAEK
+222.15	215.1
+226.12	430.3
+231.15	2031.2
+232.24	955.1
+241.22	230.4
+242.50	344.8
+243.29	93.3
+244.33	770.5
+245.10	291.0
+251.73	315.3
+253.21	348.0
+257.19	370.3
+258.25	1122.5
+259.30	683.3
+261.30	602.0
+262.20	234.3
+266.27	451.5
+267.18	294.7
+269.20	232.8
+270.16	212.1
+271.24	124.4
+272.11	215.8
+275.34	328.5
+276.20	7651.9
+277.25	861.3
+277.93	72.0
+284.14	644.3
+285.15	262.7
+286.39	243.0
+291.42	459.6
+294.19	207.4
+295.43	455.0
+296.25	276.5
+297.18	396.1
+303.36	614.7
+305.27	216.3
+308.28	454.7
+310.35	793.8
+311.28	1132.6
+313.27	324.8
+314.28	148.8
+315.28	707.1
+324.29	862.0
+325.25	264.7
+326.56	311.0
+327.32	272.3
+328.29	148.9
+330.23	162.9
+331.36	155.8
+333.12	323.8
+334.09	178.8
+336.20	547.7
+339.28	419.3
+340.80	530.3
+342.43	389.1
+343.33	858.5
+344.23	641.2
+347.28	1662.9
+348.50	338.7
+349.50	504.0
+350.34	137.8
+352.23	174.6
+354.65	561.3
+355.46	328.7
+357.48	241.0
+359.15	169.6
+361.22	88.9
+363.25	208.1
+365.00	1175.1
+367.46	251.3
+368.27	126.7
+369.16	321.0
+371.18	1050.7
+372.21	291.4
+373.30	976.8
+375.25	480.5
+378.77	287.8
+381.28	989.9
+382.09	222.1
+383.31	721.1
+384.43	245.6
+385.34	307.9
+392.29	129.6
+395.04	1013.0
+397.28	657.8
+398.35	412.4
+399.07	211.3
+401.38	761.4
+403.17	392.7
+404.45	382.6
+406.07	529.0
+409.30	941.1
+410.45	401.6
+412.32	1822.4
+413.45	196.0
+415.37	886.4
+417.45	556.4
+418.43	1548.0
+419.31	909.6
+420.27	1269.1
+421.35	100.5
+422.27	1072.7
+423.21	733.0
+424.26	1664.9
+425.52	643.1
+427.33	1110.1
+428.25	813.2
+429.21	968.2
+430.18	209.9
+431.36	980.7
+433.36	265.0
+434.32	230.9
+437.21	165.4
+440.34	3389.4
+441.23	1414.0
+442.38	767.9
+444.27	961.5
+445.50	639.4
+450.58	210.0
+452.31	453.2
+453.58	506.0
+455.46	820.0
+457.42	328.8
+458.35	1172.6
+459.84	792.2
+461.34	558.4
+462.34	6647.8
+463.49	2858.2
+464.38	507.9
+466.55	218.5
+467.39	393.0
+468.51	816.1
+470.25	367.3
+471.43	1705.3
+472.19	819.5
+473.45	849.2
+474.80	1453.2
+477.43	287.4
+478.45	331.7
+479.32	704.1
+480.42	1086.9
+481.40	552.8
+484.42	248.4
+485.43	927.4
+486.38	960.0
+487.12	1621.6
+488.43	291.9
+489.32	388.4
+491.26	484.4
+492.43	922.4
+494.34	1188.2
+495.43	1722.2
+497.45	435.9
+498.20	270.1
+499.33	553.4
+500.42	208.2
+501.42	654.3
+502.35	191.0
+504.47	395.3
+505.32	2859.5
+506.07	1331.3
+507.34	813.6
+508.50	269.9
+510.34	143.7
+511.47	848.2
+512.44	349.8
+513.33	183.0
+514.37	1457.9
+515.39	1279.6
+516.75	138.7
+519.84	385.6
+521.34	707.9
+522.48	831.6
+523.45	420.6
+524.68	332.5
+525.38	138.3
+526.30	917.4
+527.50	218.1
+528.36	492.2
+531.44	721.0
+535.55	141.4
+537.52	1206.4
+538.36	175.6
+539.36	1106.1
+540.21	361.0
+541.38	600.1
+542.39	2197.9
+543.27	1295.5
+544.18	263.3
+545.49	111.9
+548.34	523.6
+549.41	514.1
+550.44	284.6
+552.33	137.1
+553.37	903.2
+554.46	1225.1
+555.52	2405.3
+556.65	1106.9
+557.49	786.3
+558.86	1888.8
+559.50	1591.0
+560.46	332.5
+561.38	878.1
+564.40	680.8
+566.47	491.2
+567.50	1182.7
+568.47	250.0
+572.36	778.2
+573.35	175.1
+574.83	201.4
+575.88	1850.8
+576.52	4304.3
+577.58	7036.5
+578.41	3519.4
+579.43	790.3
+580.48	239.0
+581.39	178.3
+582.35	276.8
+583.32	706.7
+584.44	862.5
+585.39	820.8
+587.65	1797.1
+588.39	681.8
+589.43	1309.3
+590.44	107.5
+591.82	1806.1
+592.72	128.8
+593.55	678.9
+594.29	966.4
+595.55	332.7
+596.22	529.0
+597.26	791.3
+598.07	885.6
+599.01	1687.5
+600.07	1972.0
+602.62	969.3
+603.78	1327.5
+604.52	727.6
+606.53	707.3
+609.60	377.1
+610.49	1431.3
+611.49	613.4
+612.62	707.5
+613.29	946.6
+614.39	936.4
+615.38	1696.7
+616.58	1958.4
+617.30	51.2
+619.43	4515.9
+620.42	3058.7
+621.56	2387.4
+622.59	1527.2
+623.59	1839.5
+624.41	2587.4
+625.41	1202.7
+626.57	674.2
+627.42	424.7
+628.42	922.2
+629.36	321.4
+630.28	2294.3
+631.26	573.6
+633.46	4293.5
+634.38	994.8
+635.50	1300.6
+637.28	1310.6
+639.15	6815.4
+640.44	4771.1
+641.43	2247.8
+642.26	990.3
+643.43	992.9
+644.46	1600.0
+645.38	165.6
+647.32	5624.7
+647.92	1085.2
+648.54	1520.0
+650.77	1051.1
+651.51	980.8
+653.27	386.0
+654.45	1395.7
+656.64	2493.4
+657.37	190.7
+658.37	380.0
+660.38	723.7
+661.81	2816.5
+662.47	855.0
+665.74	1114.5
+667.70	648.6
+668.70	611.5
+670.59	528.2
+671.70	3173.5
+672.61	858.7
+673.37	518.1
+675.28	202.1
+676.46	784.4
+677.32	891.8
+679.30	559.8
+680.74	727.5
+682.52	410.6
+683.41	57.8
+684.24	1861.7
+685.35	608.0
+686.55	413.3
+687.44	373.9
+688.76	1118.9
+689.48	446.2
+690.44	1531.4
+691.80	3243.5
+692.43	793.5
+693.74	2091.2
+694.54	3539.1
+695.74	605.4
+696.47	80.6
+698.75	1746.8
+699.71	902.8
+700.37	442.0
+702.68	6153.2
+703.57	5776.3
+704.43	1245.5
+705.70	576.8
+707.78	1771.0
+708.65	1508.2
+709.56	1246.1
+711.55	8745.4
+712.43	4402.2
+713.14	142.6
+715.01	645.3
+716.60	3977.7
+717.65	4870.4
+720.45	26895.8
+721.41	7756.3
+722.17	2128.9
+723.32	989.7
+724.34	698.3
+725.67	245.8
+726.44	154.5
+727.49	612.8
+730.35	343.5
+731.52	709.9
+732.92	2950.4
+733.66	3000.5
+734.52	1696.0
+735.62	3270.2
+737.40	1717.4
+738.44	243.2
+739.28	2173.8
+740.63	184.0
+741.47	2744.6
+742.08	388.6
+742.70	917.1
+743.82	443.1
+744.63	959.5
+745.67	4948.2
+746.40	2072.6
+747.02	264.7
+747.99	481.7
+749.39	2365.3
+750.34	1523.3
+751.38	2000.3
+752.65	18627.3
+753.62	4943.6
+754.50	3111.5
+755.78	1725.1
+756.71	1234.9
+757.54	2362.6
+758.58	3455.5
+759.51	320.3
+760.76	1380.4
+762.27	2400.5
+763.03	3926.8
+763.94	1856.3
+764.79	290.4
+766.67	15190.9
+767.66	31097.7
+768.54	9313.9
+769.28	1613.3
+770.30	2269.9
+771.80	708.7
+772.56	224.6
+773.53	234.5
+775.82	28382.5
+776.65	62637.0
+777.59	7367.0
+778.21	352.0
+782.47	191.0
+788.52	273.4
+789.53	162.0
+792.77	638.0
+794.45	745.0
+797.45	364.6
+798.56	185.9
+799.53	330.3
+801.72	1330.7
+811.54	1388.5
+813.51	158.0
+814.46	1694.3
+815.51	1337.6
+816.54	234.0
+817.58	665.7
+818.49	981.8
+819.61	658.6
+822.54	173.9
+827.89	334.6
+830.11	605.3
+831.62	2185.3
+832.58	3591.4
+833.42	524.8
+834.45	338.2
+835.44	8816.1
+836.62	3783.7
+838.67	1190.7
+840.55	563.5
+842.70	239.9
+844.63	779.8
+846.60	512.1
+849.57	12136.6
+850.57	3998.9
+851.74	1094.7
+853.63	393.6
+854.81	81.2
+859.36	182.1
+867.46	317.4
+869.66	236.6
+875.39	280.1
+879.00	135.1
+880.48	612.9
+884.21	1250.3
+887.63	117.1
+888.60	111.9
+890.35	360.1
+895.45	274.2
+898.69	386.7
+899.55	416.4
+901.69	567.5
+903.43	216.5
+907.48	213.3
+908.44	397.7
+909.45	3061.4
+910.81	1370.6
+912.39	1802.8
+913.57	889.8
+915.51	563.1
+916.54	576.0
+917.39	381.5
+918.84	307.3
+919.62	311.9
+921.06	1028.8
+923.48	924.8
+925.45	277.1
+926.88	419.2
+927.70	140.3
+928.57	759.5
+929.63	851.4
+930.61	552.8
+931.69	140.1
+932.62	377.2
+933.40	110.2
+934.62	256.7
+935.82	808.4
+936.63	5353.9
+937.45	3296.2
+938.06	906.5
+938.69	157.0
+939.90	1255.5
+941.93	107.9
+942.71	595.3
+944.64	312.5
+947.40	242.7
+948.83	512.1
+949.84	1085.6
+950.72	585.3
+951.86	1329.1
+952.64	851.4
+953.58	903.8
+954.49	400.4
+955.81	271.0
+958.80	89.0
+959.52	499.1
+962.35	757.9
+964.63	88.6
+965.68	1260.4
+967.02	1344.8
+968.50	1087.0
+969.38	1273.9
+970.45	1521.2
+971.97	486.2
+973.02	1172.7
+975.37	3043.5
+976.62	2757.3
+978.55	621.7
+980.42	346.6
+983.30	475.5
+984.69	249.8
+985.63	196.3
+988.78	163.5
+992.48	3458.0
+993.56	18198.6
+994.68	8532.4
+995.60	3634.7
+996.86	113.0
+997.91	264.2
+998.71	433.2
+1002.52	513.4
+1003.45	192.6
+1004.53	227.9
+1007.65	595.9
+1008.67	577.4
+1010.75	410.0
+1011.61	1210.1
+1012.67	717.9
+1014.64	519.0
+1020.41	1351.2
+1021.02	1176.7
+1022.99	220.4
+1023.66	823.9
+1024.87	859.3
+1026.53	481.3
+1028.19	1272.4
+1029.62	159.8
+1030.23	115.1
+1031.67	675.0
+1033.11	328.5
+1040.75	569.9
+1046.43	684.6
+1047.56	556.1
+1049.54	679.2
+1050.83	202.0
+1054.96	201.7
+1055.99	329.2
+1058.38	453.5
+1060.15	660.2
+1062.63	255.1
+1064.68	869.2
+1065.92	897.2
+1066.74	382.8
+1067.80	321.4
+1069.53	227.3
+1070.72	378.5
+1073.84	912.5
+1074.89	706.1
+1077.42	2053.0
+1081.71	341.3
+1082.64	775.3
+1087.53	361.5
+1089.81	2140.6
+1090.63	3634.1
+1091.59	1005.0
+1092.44	258.0
+1095.85	305.2
+1096.63	244.4
+1098.64	310.1
+1103.74	898.3
+1104.55	295.0
+1106.49	414.2
+1107.62	19912.3
+1108.60	11504.9
+1109.74	2027.9
+1110.64	666.1
+1111.32	256.0
+1112.70	682.1
+1116.78	1351.0
+1117.92	197.0
+1118.63	656.6
+1121.71	777.5
+1130.83	609.1
+1133.29	618.6
+1134.05	235.4
+1134.72	1351.4
+1135.96	448.8
+1137.96	247.2
+1139.80	68.1
+1147.35	358.6
+1148.43	1030.7
+1149.86	1004.4
+1150.86	1562.3
+1151.77	4737.5
+1152.65	904.7
+1153.40	940.1
+1154.64	1004.3
+1155.88	457.9
+1161.46	256.9
+1162.68	648.5
+1167.73	173.1
+1169.10	568.1
+1176.54	522.9
+1183.83	356.9
+1187.89	589.7
+1188.87	867.7
+1190.62	284.9
+1194.94	748.2
+1198.97	226.2
+1199.70	909.0
+1204.72	1023.0
+1205.75	1904.3
+1206.60	570.3
+1209.87	294.8
+1213.72	210.8
+1214.71	549.4
+1218.30	382.2
+1222.56	2222.2
+1223.67	973.6
+1224.90	1159.9
+1236.89	139.5
+1237.80	86.4
+1240.89	209.0
+1242.04	231.2
+1245.63	477.2
+1248.60	292.1
+1250.90	241.2
+1258.73	1915.9
+1259.84	1370.2
+1260.77	346.6
+1264.19	116.2
+1264.87	666.9
+1271.15	233.5
+1275.95	2237.8
+1276.81	3059.9
+1277.72	1607.5
+1278.74	418.6
+1285.49	561.3
+1287.81	374.6
+1290.71	509.6
+1293.69	45114.2
+1294.72	30144.4
+1295.68	11608.2
+1296.48	296.7
+1299.91	279.8
+1300.91	254.0
+1308.27	409.7
+1308.94	390.1
+1309.61	789.7
+1310.68	115.3
+1313.74	415.4
+1319.81	249.9
+1322.71	350.5
+1360.81	712.2
+1387.66	60.8
+1389.08	385.4
+1394.97	416.9
+1396.13	166.4
+1403.84	429.0
+1404.85	514.8
+1405.68	1268.6
+1407.81	343.8
+1421.63	1608.4
+1422.83	3651.5
+1423.79	2601.8
+1424.90	1284.5
+1440.02	145.6
+1442.08	251.2
+1442.91	456.2
+1451.93	218.1
+1459.69	232.7
+1472.73	339.1
+1505.74	292.4
+1565.08	294.4
+S	2	2	523.6
+Z	3	1550.6
+D	seq	FKWNGTDTNSAAEK
+D	modified seq	FKWNGTDTNSAAEK
+155.13	280.9
+157.25	605.4
+158.28	866.1
+159.24	189.5
+167.44	1114.1
+168.21	246.4
+169.14	777.8
+171.12	582.8
+172.02	916.1
+173.09	622.7
+175.07	4567.1
+176.10	130.6
+177.16	566.0
+178.33	172.6
+180.03	224.8
+183.16	1033.2
+184.04	222.8
+185.17	1890.0
+187.28	616.1
+188.03	131.3
+189.19	524.3
+190.07	240.4
+193.12	112.1
+194.21	712.8
+196.30	573.9
+196.96	252.6
+199.15	856.9
+200.24	1197.6
+201.24	755.0
+202.36	758.4
+203.12	1505.2
+204.13	376.7
+205.13	819.9
+207.13	297.2
+209.19	1813.6
+211.13	1736.9
+212.04	267.2
+213.15	704.2
+215.15	1774.6
+216.10	565.4
+217.01	1742.7
+218.20	1244.7
+219.10	742.8
+221.13	6419.6
+221.82	115.0
+223.11	144.2
+224.17	359.2
+225.19	463.3
+226.18	1373.2
+227.24	2987.6
+228.10	4079.3
+229.84	3421.2
+231.19	3218.1
+232.23	532.2
+233.10	100.0
+234.27	383.3
+235.19	206.6
+238.17	205.4
+240.10	854.7
+241.14	285.7
+242.15	337.5
+243.14	95.6
+244.22	2239.3
+245.22	1260.7
+246.20	820.6
+247.24	880.6
+250.18	234.0
+251.10	144.9
+252.21	116.6
+253.30	1107.0
+254.36	885.5
+254.97	183.7
+256.11	1648.4
+257.31	249.3
+258.15	3643.6
+259.18	2208.9
+260.31	538.4
+261.52	1833.9
+262.28	227.7
+263.26	623.2
+264.35	410.2
+265.31	128.8
+266.46	497.5
+268.28	526.5
+269.09	399.5
+270.15	146.3
+271.24	663.4
+272.22	675.1
+274.24	434.8
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