Mercurial > repos > galaxy-australia > panaroo
changeset 2:b05be6316263 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/panaroo commit 95eb601ee5e08ebcca551bd949b83e0b85718df8
| author | iuc |
|---|---|
| date | Tue, 20 Jan 2026 13:23:28 +0000 |
| parents | b6a78d286482 |
| children | |
| files | macros.xml panaroo.xml |
| diffstat | 2 files changed, 3 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/macros.xml Fri Apr 11 11:23:50 2025 +0000 +++ b/macros.xml Tue Jan 20 13:23:28 2026 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">1.5.2</token> + <token name="@TOOL_VERSION@">1.6.0</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">23.2</token> <xml name="edam_ontology">
--- a/panaroo.xml Fri Apr 11 11:23:50 2025 +0000 +++ b/panaroo.xml Tue Jan 20 13:23:28 2026 +0000 @@ -28,6 +28,7 @@ --threshold '$advanced.matching_option.threshold' --family_threshold '$advanced.matching_option.family_threshold' --len_dif_percent '$advanced.matching_option.len_dif_percent' + --family_len_dif_percent '$advanced.matching_option.family_len_dif_percent' $advanced.matching_option.merge_paralogs --search_radius '$advanced.refind_option.search_radius' --refind_prop_match '$advanced.refind_option.refind_prop_match' @@ -84,6 +85,7 @@ <param argument="--threshold" type="float" value="0.98" label="Sequence identity threshold" help="default: 0.98"/> <param argument="--family_threshold" type="float" value="0.7" label="Protein family sequence identity threshold" help="default: 0.7"/> <param argument="--len_dif_percent" type="float" value="0.98" label="Length difference cutoff" help="default: 0.98"/> + <param argument="--family_len_dif_percent" type="float" value="0.0" label="Length difference cutoff at the gene family level" help="default: 0.0"/> <param argument="--merge-paralogs" type="boolean" truevalue="--merge_paralogs" falsevalue="" label="Merge Paralogs"/> </section>