Mercurial > repos > galaxy-australia > panaroo

annotate macros.xml @ 2:b05be6316263 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/panaroo commit 95eb601ee5e08ebcca551bd949b83e0b85718df8
author iuc
date Tue, 20 Jan 2026 13:23:28 +0000
parents b6a78d286482
children
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50483f852947 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 0abf1ced6a6d8f85ed4fc244de2bc337f889aca2-dirty
galaxy-australia
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1 <macros>
2
b05be6316263 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/panaroo commit 95eb601ee5e08ebcca551bd949b83e0b85718df8
iuc
parents: 1
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2 <token name="@TOOL_VERSION@">1.6.0</token>
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b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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3 <token name="@VERSION_SUFFIX@">0</token>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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4 <token name="@PROFILE@">23.2</token>
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50483f852947 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 0abf1ced6a6d8f85ed4fc244de2bc337f889aca2-dirty
galaxy-australia
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5 <xml name="edam_ontology">
1
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
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6 <edam_topics>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
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7 <edam_topic>topic_0080</edam_topic>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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8 <edam_topic>topic_0194</edam_topic>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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9 </edam_topics>
0
50483f852947 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 0abf1ced6a6d8f85ed4fc244de2bc337f889aca2-dirty
galaxy-australia
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10 </xml>
1
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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11 <xml name="biotools">
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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12 <xrefs>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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13 <xref type="bio.tools">panaroo</xref>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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14 </xrefs>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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15 </xml>
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50483f852947 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 0abf1ced6a6d8f85ed4fc244de2bc337f889aca2-dirty
galaxy-australia
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16 <xml name="requirements">
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b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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17 <requirements>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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18 <requirement type="package" version="@TOOL_VERSION@">panaroo</requirement>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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19 <requirement type="package" version="170427">prank</requirement>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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20 <requirement type="package" version="1.2.4">clustalo</requirement>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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21 </requirements>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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22 </xml>
0
50483f852947 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 0abf1ced6a6d8f85ed4fc244de2bc337f889aca2-dirty
galaxy-australia
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23 <xml name="genetic_code">
1
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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24 <option value="1">1. Standard</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
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25 <option value="2">2. Vertebrate Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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26 <option value="3">3. Yeast Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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27 <option value="4">4. Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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28 <option value="5">5. Invertebrate Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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29 <option value="6">6. Ciliate, Dasycladacean and Hexamita Nuclear Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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30 <option value="9">9. Echinoderm Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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31 <option value="10">10. Euplotid Nuclear</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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32 <option value="11" selected="True">11. Bacteria and Archaea</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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33 <option value="12">12. Alternative Yeast Nuclear</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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34 <option value="13">13. Ascidian Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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35 <option value="14">14. Flatworm Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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36 <option value="15">15. Blepharisma Macronuclear</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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37 <option value="16">16. Chlorophycean Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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38 <option value="21">21. Trematode Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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39 <option value="22">22. Scenedesmus obliquus mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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40 <option value="23">23. Thraustochytrium Mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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41 <option value="24">24. Pterobranchia mitochondrial</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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42 <option value="25">25. Candidate Division SR1 and Gracilibacteria Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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43 <option value="26">26. Pachysolen tannophilus Nuclear Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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44 <option value="27">27. Karyorelict Nuclear Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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45 <option value="28">28. Condylostoma Nuclear Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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46 <option value="29">29. Mesodinium Nuclear Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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47 <option value="30">30. Peritrich Nuclear Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
parents: 0
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48 <option value="31">31. Blastocrithidia Nuclear Code</option>
b6a78d286482 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
iuc
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49 <option value="33">33. Cephalodiscidae Mitochondrial UAA-Tyr Code</option>
0
50483f852947 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 0abf1ced6a6d8f85ed4fc244de2bc337f889aca2-dirty
galaxy-australia
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50 </xml>
50483f852947 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 0abf1ced6a6d8f85ed4fc244de2bc337f889aca2-dirty
galaxy-australia
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51 </macros>