Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/install-history.py @ 3:1c652687a08f draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Fri, 30 Apr 2021 07:06:57 +0000
parents
children
comparison
equal deleted inserted replaced
2:5fc0c9a93072 3:1c652687a08f
1 import argparse
2 import os
3
4
5 from bioblend import galaxy
6
7
8 def _parser():
9 parser = argparse.ArgumentParser()
10 parser.add_argument("-g", "--galaxy", help='URL of target galaxy')
11 parser.add_argument("-p", "--password", help='Galaxy admin password')
12 parser.add_argument("-e", "--email", help='Galaxy admin email')
13 parser.add_argument("-a", "--key", help='Galaxy admin key', default=None)
14 parser.add_argument("-i", "--history_path", help='Path to history gz files to be loaded')
15 return parser
16
17 def main():
18 """
19 load a folder of histories or a single gz
20 """
21 args = _parser().parse_args()
22 if args.key:
23 gi = galaxy.GalaxyInstance(url=args.galaxy, key=args.key)
24 else:
25 gi = galaxy.GalaxyInstance(url=args.galaxy, email=args.email, password=args.password)
26 hdir = args.history_path
27 # h = gi.histories.get_most_recently_used_history()
28 if os.path.isdir(hdir):
29 for fp in os.listdir(hdir):
30 hp = os.path.join(hdir,fp)
31 if os.path.isfile(hp):
32 x = gi.histories.import_history(file_path=hp, url=None)
33 print('installed ',hp,'res=',x)
34 else:
35 x = gi.histories.import_history(file_path=hdir, url=None)
36 print('installed',hdir,'res=',x)
37
38
39 if __name__ == "__main__":
40 main()
41