Mercurial > repos > fubar > rnastar_2_3_0e
comparison prepStar.sh @ 5:2700820cbec1 draft default tip
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| author | fubar |
|---|---|
| date | Fri, 09 Aug 2013 04:30:15 -0400 |
| parents | 7ec5dfde90a3 |
| children |
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| 4:17ca51ddd516 | 5:2700820cbec1 |
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| 1 # automate their generation f | |
| 2 # from existing fasta genomes | |
| 3 INDEXROOT=/data/ucsc | |
| 4 # fix that | |
| 5 for genome in hg19 hg18 mm9 mm10 rn4 rn5 | |
| 6 do | |
| 7 TARGET=${INDEXROOT}/${genome}/rnastar | |
| 8 mkdir -p $TARGET | |
| 9 cd $TARGET | |
| 10 STAR --runMode genomeGenerate --genomeDir $TARGET --genomeFastaFiles ${TARGET}/$genome.fa --runThreadN 4 | |
| 11 done | |
| 12 |