Mercurial > repos > fubar > htseq_bams_to_count_matrix

diff test-data/generatetest.sh @ 50:0edc994d4021 draft

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author iuc
date Wed, 18 Feb 2015 11:37:05 -0500
parents c57e63d1a9d2
children
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--- a/test-data/generatetest.sh	Fri Jan 02 03:32:39 2015 -0500
+++ b/test-data/generatetest.sh	Wed Feb 18 11:37:05 2015 -0500
@@ -1,3 +1,1 @@
-#python ../htseqsams2mx.py -g rn4_chr20_100k.gtf -o test.xls --samf "'rn4chr20test1.bam','col1'" --samf "'rn4chr20test2.bam','col2'"
-python ../htseqsams2mx.py -g rn4_chr20_100k.gtf -o htseqsams2mx_test1_out.xls --samf "'rn4chr20test1.bam','test1','bam','rn4chr20test1.bai'" --samf "'rn4chr20test2.bam','test2','bam','rn4chr20test2.bai'"
-
+python ../htseqsams2mx.py -g rn4_chr20_100k.gtf -o test.xls --samf "'rn4chr20test1.bam','rn4chr20test1.bam','bam','rn4chr20test1.bam.bai'" --samf "'rn4chr20test2.bam','rn4chr20test2.bam','bam','rn4chr20test2.bam.bai'"