Mercurial > repos > fubar > htseq_bams_to_count_matrix

comparison tool_dependencies.xml @ 60:f6211fc2f92f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq commit e8e971905f5fce11a99d51b1399af45288389d76
author iuc
date Thu, 21 May 2015 22:48:36 -0400
parents 9b59cd40f20d
children 0c871984a634
comparison
equal deleted inserted replaced
59:57841366f112 60:f6211fc2f92f
2 <tool_dependency> 2 <tool_dependency>
3 <package name="pysam" version="0.7.6"> 3 <package name="pysam" version="0.7.6">
4 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="matplotlib" version="1.2.1"> 6 <package name="matplotlib" version="1.2.1">
7 <repository changeset_revision="9f3e58477115" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="4d3806ad04c2" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="htseq" version="0.5.4p3"> 9 <package name="htseq" version="0.5.4p3">
10 <install version="1.0"> 10 <install version="1.0">
11 <actions> 11 <actions>
12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> 12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action>
13 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
14 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
15 <package name="pysam" version="0.7.6" /> 15 <package name="pysam" version="0.7.6" />
16 </repository> 16 </repository>
17 <repository changeset_revision="9f3e58477115" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="4d3806ad04c2" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
18 <package name="matplotlib" version="1.2.1" /> 18 <package name="matplotlib" version="1.2.1" />
19 </repository> 19 </repository>
20 </action> 20 </action>
21 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> 21 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
22 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> 22 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->