Mercurial > repos > fubar > htseq_bams_to_count_matrix
comparison tool_dependencies.xml @ 49:c57e63d1a9d2 draft
working test. first upload
| author | fubar |
|---|---|
| date | Fri, 02 Jan 2015 03:32:39 -0500 |
| parents | 58fe9656873a |
| children | 0edc994d4021 |
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| 48:58fe9656873a | 49:c57e63d1a9d2 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="pysam" version="0.7.6"> | 3 <package name="pysam" version="0.7.6"> |
| 4 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="matplotlib" version="1.2.1"> | 6 <package name="matplotlib" version="1.2.1"> |
| 7 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 7 <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <package name="htseq" version="0.5.4p3"> | 9 <package name="htseq" version="0.5.4p3"> |
| 10 <install version="1.0"> | 10 <install version="1.0"> |
| 11 <actions> | 11 <actions> |
| 12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> | 12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> |
| 13 <action type="set_environment_for_install"> | 13 <action type="set_environment_for_install"> |
| 14 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 14 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 15 <package name="pysam" version="0.7.6" /> | 15 <package name="pysam" version="0.7.6" /> |
| 16 </repository> | 16 </repository> |
| 17 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 17 <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 18 <package name="matplotlib" version="1.2.1" /> | 18 <package name="matplotlib" version="1.2.1" /> |
| 19 </repository> | 19 </repository> |
| 20 </action> | 20 </action> |
| 21 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> | 21 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> |
| 22 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> | 22 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> |