Mercurial > repos > fubar > fastqc_320

comparison FastQC/tool_dependencies.xml @ 11:ed9e8630cda3 draft

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Uploaded
author fubar
date Mon, 03 Jun 2013 23:37:37 -0400
parents 46dc4dab4055
children 7ea207f29f71
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10:46dc4dab4055 11:ed9e8630cda3
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable name="FASTQC_BINARY_PATH">$INSTALL_DIR/FastQC/fastqc</environment_variable>
5 </set_environment>
3 <package name="FastQC" version="0.10.1"> 6 <package name="FastQC" version="0.10.1">
4 <install version="1.0"> 7 <install version="1.0">
5 <actions> 8 <actions>
6 <action type="set_environment">
7 <environment_variable name="FASTQC_BINARY_PATH">$INSTALL_DIR/FastQC/fastqc</environment_variable>
8 </action>
9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> 9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
10 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action> 10 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
11 </actions> 11 </actions>
12 </install> 12 </install>
13 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment 13 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment