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comparison FastQC/tool_dependencies.xml @ 12:7ea207f29f71 draft

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author fubar
date Mon, 03 Jun 2013 23:53:17 -0400
parents ed9e8630cda3
children c3ac02711af2
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11:ed9e8630cda3 12:7ea207f29f71
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable name="FASTQC_BINARY_PATH">$INSTALL_DIR/FastQC/fastqc</environment_variable>
5 </set_environment>
6 <package name="FastQC" version="0.10.1"> 3 <package name="FastQC" version="0.10.1">
7 <install version="1.0"> 4 <install version="1.0">
8 <actions> 5 <actions>
9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> 6 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
7 <action type="move_directory_files">
8 <source_directory>FastQC</source_directory>
9 <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
10 </action>
10 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action> 11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
12 <action type="set_environment">
13 <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable>
14 </action>
11 </actions> 15 </actions>
12 </install> 16 </install>
13 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment 17 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment
14 available to all potential execution nodes for this tool to work. 18 available to all potential execution nodes for this tool to work.
15 Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme> 19 Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme>