Mercurial > repos > fubar > fastqc_320

comparison FastQC/tool_dependencies.xml @ 10:46dc4dab4055 draft

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author fubar
date Mon, 03 Jun 2013 23:31:40 -0400
parents c13fa2748191
children ed9e8630cda3
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9:c13fa2748191 10:46dc4dab4055
5 <actions> 5 <actions>
6 <action type="set_environment"> 6 <action type="set_environment">
7 <environment_variable name="FASTQC_BINARY_PATH">$INSTALL_DIR/FastQC/fastqc</environment_variable> 7 <environment_variable name="FASTQC_BINARY_PATH">$INSTALL_DIR/FastQC/fastqc</environment_variable>
8 </action> 8 </action>
9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> 9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
10 <action type="move_directory_files">
11 <source_directory>./</source_directory>
12 <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
13 </action>
14 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action> 10 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
15 </actions> 11 </actions>
16 </install> 12 </install>
17 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment 13 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment
18 available to all potential execution nodes for this tool to work. 14 available to all potential execution nodes for this tool to work.