Mercurial > repos > fubar > fastqc_320

comparison FastQC/tool_dependencies.xml @ 3:0bec27668020 draft

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Still trying to get the install to work
author fubar
date Mon, 03 Jun 2013 21:51:16 -0400
parents 45cd27a2ad5c
children 928de8b704bc
comparison
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2:45cd27a2ad5c 3:0bec27668020
5 </set_environment> 5 </set_environment>
6 <package name="FastQC" version="0.10.1"> 6 <package name="FastQC" version="0.10.1">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_file">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> 9 <action type="download_file">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
10 <action type="shell_command">unzip fastqc_v0.10.1.zip -d $INSTALL_DIR/jars/FastQC</action> 10 <action type="shell_command">unzip fastqc_v0.10.1.zip -d $INSTALL_DIR/jars/</action>
11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/jars/FastQC/fastqc</action> 11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/jars/FastQC/fastqc</action>
12 </actions> 12 </actions>
13 </install> 13 </install>
14 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment 14 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment
15 available to all potential execution nodes for this tool to work. 15 available to all potential execution nodes for this tool to work.