Mercurial > repos > fubar > fastqc

diff FastQC/tool_dependencies.xml @ 1:95064b2e024f draft

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Uploaded
author fubar
date Tue, 04 Jun 2013 21:36:30 -0400
parents 68b330b860ee
children 40b80f54e1a7
line wrap: on
line diff
--- a/FastQC/tool_dependencies.xml	Tue Jun 04 00:21:44 2013 -0400
+++ b/FastQC/tool_dependencies.xml	Tue Jun 04 21:36:30 2013 -0400
@@ -1,5 +1,8 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable>   
+    </set_environment>
     <package name="FastQC" version="0.10.1">
         <install version="1.0">
             <actions>
@@ -9,9 +12,6 @@
                     <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
                 </action>                
                 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
-                <action type="set_environment">
-                    <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable>
-                </action>
             </actions>
         </install>
         <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment