Mercurial > repos > fubar > fastqc

diff FastQC/tool_dependencies.xml @ 2:40b80f54e1a7 draft

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Uploaded
author fubar
date Tue, 04 Jun 2013 22:18:27 -0400
parents 95064b2e024f
children d101029906cb
line wrap: on
line diff
--- a/FastQC/tool_dependencies.xml	Tue Jun 04 21:36:30 2013 -0400
+++ b/FastQC/tool_dependencies.xml	Tue Jun 04 22:18:27 2013 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <set_environment version="1.0">
-        <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable>   
+        <environment_variable name="FASTQC_INSTALL_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable>   
     </set_environment>
     <package name="FastQC" version="0.10.1">
         <install version="1.0">
@@ -12,6 +12,9 @@
                     <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
                 </action>                
                 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC</environment_variable>
+                </action>
             </actions>
         </install>
         <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment