--- a/rgedgeR/tool_dependencies.xml	Wed Jun 12 05:21:25 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml	Wed Jun 12 06:13:41 2013 -0400
@@ -1,37 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="readline" version="6.2">
-        <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="package_R" version="3.0.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="package_readline_6_2" version="6.2" />
-                    </repository>
-                </action>
-                <action type="make_directory">$INSTALL_DIR</action>
-                <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib  --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
-                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>R is a free software environment for statistical computing and graphics
-                WARNING: See custom compilation options above
-                Modified from an older version of R by Boris by Ross Lazarus for R 3.0
-                Added Bioc basics too
-       </readme>
-    </package>
     <package name="package_BioCBasics" version="2.12">
         <install version="1.0">
             <actions>
                 <action type="set_environment_for_install">
-                    <package name="package_R" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1" />
+                    <repository name="package_R" owner="fubar" prior_installation_required="True"  toolshed="http://testtoolshed.g2.bx.psu.edu/"/>
                 </action>
                 <action type="shell_command">$R_HOME/bin/R CMD BATCH installBioC.R </action>
             </actions>