Mercurial > repos > fubar > edger_test

comparison rgedgeR/tool_dependencies.xml @ 38:ba361e7ebc17 draft

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author fubar
date Thu, 13 Jun 2013 01:09:25 -0400
parents faf413433dca
children d110c5bb0ad3
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37:faf413433dca 38:ba361e7ebc17
9 <action type="set_environment_for_install"> 9 <action type="set_environment_for_install">
10 <repository changeset_revision="6344ee60d0cf" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 10 <repository changeset_revision="6344ee60d0cf" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
11 <package name="r3" version="3.0.1" /> 11 <package name="r3" version="3.0.1" />
12 </repository> 12 </repository>
13 </action> 13 </action>
14 <action type="shell_command">R CMD BATCH ${REPOSITORY_INSTALL_DIR}/rgedgeR/installBioC.R </action> 14 <action type="shell_command">R CMD BATCH rgedgeR/installBioC.R </action>
15 </actions> 15 </actions>
16 </install> 16 </install>
17 <readme>Installs some basic bioc packages for the edgeR tool 17 <readme>Installs some basic bioc packages for the edgeR tool
18 </readme> 18 </readme>
19 </package> 19 </package>