Mercurial > repos > fubar > edger_test

comparison rgedgeR/tool_dependencies.xml @ 17:13b7fdf4cba9 draft

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author fubar
date Wed, 12 Jun 2013 07:44:46 -0400
parents 1eb7a4834c1a
children 3f316c8adf4c
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16:d28ce4e0e3af 17:13b7fdf4cba9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment>
6 <package name="package_BioCBasics" version="2.12"> 3 <package name="package_BioCBasics" version="2.12">
7 <install version="1.0"> 4 <install version="1.0">
8 <actions> 5 <actions>
9 <action type="set_environment_for_install"> 6 <action type="set_environment_for_install">
10 <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/> 7 <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
8 <set_environment toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.0">
9 <environment_variable action="set_to" name="R_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
10 </set_environment>
11 </action> 11 </action>
12 <action type="shell_command">$R3_BINARY/R CMD BATCH $R_SCRIPT_PATH/installBioC.R </action> 12 <action type="shell_command">R CMD BATCH installBioC.R </action>
13 </actions> 13 </actions>
14 </install> 14 </install>
15 <readme>R is a free software environment for statistical computing and graphics 15 <readme>R is a free software environment for statistical computing and graphics
16 WARNING: See custom compilation options above 16 WARNING: See custom compilation options above
17 Modified from an older version of R by Boris by Ross Lazarus for R 3.0 17 Modified from an older version of R by Boris by Ross Lazarus for R 3.0