Mercurial > repos > fubar > differential_count_models
comparison rgedgeR/rgToolFactory.py @ 6:cd586457aced draft
Uploaded
| author | fubar |
|---|---|
| date | Sat, 27 Jul 2013 01:07:52 -0400 |
| parents | 2122e630b13a |
| children | 372ce0323554 |
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| 5:f1e6a5f8a611 | 6:cd586457aced |
|---|---|
| 114 self.useIM = cmd_exists('convert') | 114 self.useIM = cmd_exists('convert') |
| 115 self.useGS = cmd_exists('gs') | 115 self.useGS = cmd_exists('gs') |
| 116 self.treatbashSpecial = treatbashSpecial | 116 self.treatbashSpecial = treatbashSpecial |
| 117 if opts.output_dir: # simplify for the tool tarball | 117 if opts.output_dir: # simplify for the tool tarball |
| 118 os.chdir(opts.output_dir) | 118 os.chdir(opts.output_dir) |
| 119 self.thumbformat = 'jpg' | 119 self.thumbformat = 'png' |
| 120 self.opts = opts | 120 self.opts = opts |
| 121 self.toolname = re.sub('[^a-zA-Z0-9_]+', '', opts.tool_name) # a sanitizer now does this but.. | 121 self.toolname = re.sub('[^a-zA-Z0-9_]+', '', opts.tool_name) # a sanitizer now does this but.. |
| 122 self.toolid = self.toolname | 122 self.toolid = self.toolname |
| 123 self.myname = sys.argv[0] # get our name because we write ourselves out as a tool later | 123 self.myname = sys.argv[0] # get our name because we write ourselves out as a tool later |
| 124 self.pyfile = self.myname # crude but efficient - the cruft won't hurt much | 124 self.pyfile = self.myname # crude but efficient - the cruft won't hurt much |