Mercurial > repos > fubar > differential_count_models

comparison rgedgeR/rgToolFactory.py @ 20:42c28d9fc836 draft

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Uploaded
author fubar
date Sat, 27 Jul 2013 20:57:05 -0400
parents 372ce0323554
children 1fe9db11189b
comparison
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19:372ce0323554 20:42c28d9fc836
131 tscript.write(self.script) 131 tscript.write(self.script)
132 tscript.close() 132 tscript.close()
133 self.indentedScript = '\n'.join([' %s' % x for x in s]) # for restructured text in help 133 self.indentedScript = '\n'.join([' %s' % x for x in s]) # for restructured text in help
134 self.escapedScript = '\n'.join([html_escape(x) for x in s]) 134 self.escapedScript = '\n'.join([html_escape(x) for x in s])
135 self.elog = os.path.join(self.opts.output_dir,"%s_error.log" % self.toolname) 135 self.elog = os.path.join(self.opts.output_dir,"%s_error.log" % self.toolname)
136 if opts.output_dir: # may not want these complexities 136 if opts.output_dir: # may not want these complexities
137 self.tlog = os.path.join(self.opts.output_dir,"%s_runner.log" % self.toolname) 137 self.tlog = os.path.join(self.opts.output_dir,"%s_runner.log" % self.toolname)
138 art = '%s.%s' % (self.toolname,opts.interpreter) 138 art = '%s.%s' % (self.toolname,opts.interpreter)
139 artpath = os.path.join(self.opts.output_dir,art) # need full path 139 artpath = os.path.join(self.opts.output_dir,art) # need full path
140 artifact = open(artpath,'w') # use self.sfile as script source for Popen 140 artifact = open(artpath,'w') # use self.sfile as script source for Popen
141 artifact.write(self.script) 141 artifact.write(self.script)