Mercurial > repos > fubar > differential_count_models
comparison rgedgeR/rgToolFactory.py @ 21:1fe9db11189b draft
Uploaded
| author | fubar |
|---|---|
| date | Sat, 27 Jul 2013 20:59:23 -0400 |
| parents | 42c28d9fc836 |
| children |
comparison
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| 20:42c28d9fc836 | 21:1fe9db11189b |
|---|---|
| 518 if self.opts.output_dir: | 518 if self.opts.output_dir: |
| 519 ste = open(self.elog,'w') | 519 ste = open(self.elog,'w') |
| 520 sto = open(self.tlog,'w') | 520 sto = open(self.tlog,'w') |
| 521 sto.write('## Toolfactory generated command line = %s\n' % ' '.join(self.cl)) | 521 sto.write('## Toolfactory generated command line = %s\n' % ' '.join(self.cl)) |
| 522 sto.flush() | 522 sto.flush() |
| 523 p = subprocess.Popen(self.cl,shell=False,stdout=sto,stderr=elog,stdin=subprocess.PIPE,cwd=self.opts.output_dir) | 523 p = subprocess.Popen(self.cl,shell=False,stdout=sto,stderr=ste,stdin=subprocess.PIPE,cwd=self.opts.output_dir) |
| 524 else: | 524 else: |
| 525 p = subprocess.Popen(self.cl,shell=False,stdin=subprocess.PIPE) | 525 p = subprocess.Popen(self.cl,shell=False,stdin=subprocess.PIPE) |
| 526 p.stdin.write(self.script) | 526 p.stdin.write(self.script) |
| 527 p.stdin.close() | 527 p.stdin.close() |
| 528 retval = p.wait() | 528 retval = p.wait() |