Mercurial > repos > fubar > data_manager_rnasta

annotate data_manager_conf.xml @ 2:8a2d16bfdae2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Fri, 03 Oct 2014 21:59:39 -0400
parents 84f6e67cbae5
children 102bdfdda10b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
1 <?xml version="1.0"?>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
2 <data_managers>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
3
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
4 <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1">
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
5 <data_table name="rnastar_indexes">
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
6 <output>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
7 <column name="value" />
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
8 <column name="dbkey" />
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
9 <column name="name" />
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
10 <column name="path" output_ref="out_file" >
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
11 <move type="directory" relativize_symlinks="True">
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
14 </move>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index/${value}/${path}</value_translation>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
16 <value_translation type="function">abspath</value_translation>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
17 </column>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
18 </output>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
19 </data_table>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
20 </data_manager>
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
21
84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
fubar
parents:
diff changeset
22 </data_managers>