Mercurial > repos > fubar > brokenandnotdeletablebyowneroradmin
diff README.txt @ 25:8cc3f3c0e539 default tip
Now uses admin_users to check that the user is authorized to run this tool
Docs adjusted.
| author | Ross Lazarus <ross.lazarus@gmail.com> |
|---|---|
| date | Wed, 06 Jun 2012 14:16:25 +1000 |
| parents | 8289ebc513ab |
| children |
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--- a/README.txt Wed Jun 06 12:05:25 2012 +1000 +++ b/README.txt Wed Jun 06 14:16:25 2012 +1000 @@ -11,21 +11,24 @@ a local toolshed. *The good news* If it can be trivially scripted, it can be running safely in your -local Galaxy via your own local toolshed. +local Galaxy via your own local toolshed in a few minutes. + That's what this tool does. You paste a simple script and the tool returns a new, real Galaxy tool, ready to be installed from the local toolshed to local servers. Scripts can be wrapped and online literally within minutes. -*To fully and safely exploit the awesome power* of Galaxy with this tool installed -you should be a developer installing this tool on a -personal/scratch local instance - ie a private site -because then, if you break it, you get to keep all the pieces +*To fully and safely exploit the awesome power* of this tool, Galaxy and the ToolShed, +you should be a developer installing this tool on a private/personal/scratch local instance where you are an admin_user. +Then, if you break it, you get to keep all the pieces see https://bitbucket.org/fubar/galaxytoolfactory/wiki/Home -*To make the tool work* Ghostscript and imagemagick MUST be installed, and if not already there, please add: +*To make the tool work* R, python, perl etc are needed on your path if you want to run scripts using those interpreters. +The HTML file code to shrink R's gross pdfs requires Ghostscript and imagemagick must be installed for generating the thumbnails. +If not already there (I just added it to datatypes_conf.xml.sample), please add: <datatype extension="toolshed.gz" type="galaxy.datatypes.binary:Binary" mimetype="multipart/x-gzip" subclass="True" /> -to your local data_types_conf.xml and PUT some real IDs in the list in the XML before you restart Galaxy to load this new tool please -otherwise, the tool won't run for anybody. +to your local data_types_conf.xml. + +**Note that ONLY admin_users can run this tool** *What it does* This is a tool factory for simple scripts in python, R or whatever ails ye. LIMITED to simple scripts that read one input from the history.
