Mercurial > repos > fubar > brokenandnotdeletablebyowneroradmin

comparison rgToolFactory.py @ 25:8cc3f3c0e539 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Now uses admin_users to check that the user is authorized to run this tool Docs adjusted.
author Ross Lazarus <ross.lazarus@gmail.com>
date Wed, 06 Jun 2012 14:16:25 +1000
parents 0ee2b06ea304
children
comparison
equal deleted inserted replaced
24:8289ebc513ab 25:8cc3f3c0e539
36 # There is nothing stopping a malicious user doing whatever they choose 36 # There is nothing stopping a malicious user doing whatever they choose
37 # Extremely dangerous!! 37 # Extremely dangerous!!
38 # Totally insecure. So, trusted users only 38 # Totally insecure. So, trusted users only
39 # 39 #
40 # preferred model is a developer using their throw away workstation instance - ie a private site. 40 # preferred model is a developer using their throw away workstation instance - ie a private site.
41 # no real risk. 41 # no real risk. The universe_wsgi.ini admin_users string is checked - only admin users are permitted to run this tool.
42 # a list in the xml source file is searched for users permitted to run this tool.
43 # PUT some IDs in the list in the XML before you restart Galaxy to load this new tool please
44 # otherwise, the tool won't run for anybody.
45 # 42 #
46 43
47 # 44 #
48 # copyright ross lazarus (ross stop lazarus at gmail stop com) May 2012 45 # copyright ross lazarus (ross stop lazarus at gmail stop com) May 2012
49 # 46 #
405 a('--make_HTML',default=None) 402 a('--make_HTML',default=None)
406 a('--help_text',default=None) 403 a('--help_text',default=None)
407 a('--tool_desc',default=None) 404 a('--tool_desc',default=None)
408 a('--new_tool',default=None) 405 a('--new_tool',default=None)
409 opts, args = op.parse_args() 406 opts, args = op.parse_args()
410 assert not opts.bad_user,'%s is NOT authorized to use this tool. Please ask your friendly admin to add their ID to %s.xml' % (opts.bad_user,os.path.splitext(self.myname)[0]) 407 assert not opts.bad_user,'%s is NOT authorized to use this tool. Please ask your friendly admin to add their ID to admin_users in universe_wsgi.ini' % (opts.bad_user)
411 assert opts.tool_name,'## Tool Factory expects a tool name - eg --tool_name=DESeq' 408 assert opts.tool_name,'## Tool Factory expects a tool name - eg --tool_name=DESeq'
412 assert opts.interpreter,'## Tool Factory wrapper expects an interpreter - eg --interpreter=Rscript' 409 assert opts.interpreter,'## Tool Factory wrapper expects an interpreter - eg --interpreter=Rscript'
413 assert os.path.isfile(opts.script_path),'## Tool Factory wrapper expects a script path - eg --script_path=foo.R' 410 assert os.path.isfile(opts.script_path),'## Tool Factory wrapper expects a script path - eg --script_path=foo.R'
414 if opts.output_dir: 411 if opts.output_dir:
415 try: 412 try: