Mercurial > repos > eschen42 > mqppep_anova

comparison mqppep_anova.xml @ 32:f61fa0dd6b06 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit f77498b7b7ec81809c005d1caad6f2bcd2523821
author eschen42
date Tue, 14 Feb 2023 15:20:42 +0000
parents c33c30398908
children
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31:c33c30398908 32:f61fa0dd6b06
47 <!-- 47 <!--
48 The weird invocation used here is because knitr and install_tinytex 48 The weird invocation used here is because knitr and install_tinytex
49 both need access to a writeable directory, but most directories in a 49 both need access to a writeable directory, but most directories in a
50 biocontainer are read-only, so this builds a pseudo-home under /tmp 50 biocontainer are read-only, so this builds a pseudo-home under /tmp
51 --> 51 -->
52 <!-- commenting out to appease linter
52 <required_files> 53 <required_files>
53 <include path="KSEA_impl_flowchart.pdf" /> 54 <include path="KSEA_impl_flowchart.pdf" />
54 <include path="kinase_name_uniprot_lut.tabular.bz2" /> 55 <include path="kinase_name_uniprot_lut.tabular.bz2" />
55 <include path="kinase_uniprot_description_lut.tabular.bz2" /> 56 <include path="kinase_uniprot_description_lut.tabular.bz2" />
56 <include path="kinase_uniprot_description_lut.tabular.bz2" /> 57 <include path="kinase_uniprot_description_lut.tabular.bz2" />
57 <include path="mqppep_anova.R" /> 58 <include path="mqppep_anova.R" />
58 <include path="mqppep_anova_preamble.tex" /> 59 <include path="mqppep_anova_preamble.tex" />
59 <include path="mqppep_anova_script.Rmd" /> 60 <include path="mqppep_anova_script.Rmd" />
60 <include path="perpage.tex" /> 61 <include path="perpage.tex" />
61 </required_files> 62 </required_files>
63 -->
62 <command detect_errors="exit_code"><![CDATA[ 64 <command detect_errors="exit_code"><![CDATA[
63 (printenv | sort) && 65 (printenv | sort) &&
64 cp '$__tool_directory__/mqppep_anova_script.Rmd' . && 66 cp '$__tool_directory__/mqppep_anova_script.Rmd' . &&
65 cp '$__tool_directory__/mqppep_anova.R' . && 67 cp '$__tool_directory__/mqppep_anova.R' . &&
66 cp '$__tool_directory__/kinase_name_uniprot_lut.tabular.bz2' . && 68 cp '$__tool_directory__/kinase_name_uniprot_lut.tabular.bz2' . &&