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comparison mqppep_anova.xml @ 31:c33c30398908 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 7e8b616a2519c8faeb6fd743a8fb73f271f655f9
author eschen42
date Fri, 09 Dec 2022 21:05:54 +0000
parents 8ff2c287ff1c
children f61fa0dd6b06
comparison
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30:8ff2c287ff1c 31:c33c30398908
47 <!-- 47 <!--
48 The weird invocation used here is because knitr and install_tinytex 48 The weird invocation used here is because knitr and install_tinytex
49 both need access to a writeable directory, but most directories in a 49 both need access to a writeable directory, but most directories in a
50 biocontainer are read-only, so this builds a pseudo-home under /tmp 50 biocontainer are read-only, so this builds a pseudo-home under /tmp
51 --> 51 -->
52 <required_files>
53 <include path="KSEA_impl_flowchart.pdf" />
54 <include path="kinase_name_uniprot_lut.tabular.bz2" />
55 <include path="kinase_uniprot_description_lut.tabular.bz2" />
56 <include path="kinase_uniprot_description_lut.tabular.bz2" />
57 <include path="mqppep_anova.R" />
58 <include path="mqppep_anova_preamble.tex" />
59 <include path="mqppep_anova_script.Rmd" />
60 <include path="perpage.tex" />
61 </required_files>
52 <command detect_errors="exit_code"><![CDATA[ 62 <command detect_errors="exit_code"><![CDATA[
53 (printenv | sort) && 63 (printenv | sort) &&
54 cp '$__tool_directory__/mqppep_anova_script.Rmd' . && 64 cp '$__tool_directory__/mqppep_anova_script.Rmd' . &&
55 cp '$__tool_directory__/mqppep_anova.R' . && 65 cp '$__tool_directory__/mqppep_anova.R' . &&
56 cp '$__tool_directory__/kinase_name_uniprot_lut.tabular.bz2' . && 66 cp '$__tool_directory__/kinase_name_uniprot_lut.tabular.bz2' . &&