--- a/old_version/wilcox.R	Wed Jul 22 19:20:30 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,40 +0,0 @@
-#!/usr/bin/env Rscript
-args <- commandArgs(trailingOnly = TRUE)
-fileR=args[1]
-fileT=args[2]
-#ofile=args[3]
-data_R=read.table(fileR,header=T)
-data_T=read.table(fileT,header=T)
-
-#P=wilcox.test(data_R$Score,data_T$Score,alternative="gr")$p.value
-range= rev(seq(min(data_R$VINYL_score),max(data_R$VINYL_score),0.5))
-#header=paste("Cut-off","PosD","PosH","FisherPV","OR",sep="\t");
-#cat(header,file=ofile,sep="\n",append=T)
-
-m=matrix(ncol=2,nrow=2)
-totR=nrow(data_R)
-totT=nrow(data_T)
-FoddsB=1;
-FpvalB=1;
-Fstring="";
-for (r in range)
-{
-	posR=sum(data_R$VINYL_score>=r);
-	posT=sum(data_T$VINYL_score>=r);
-	m[,1]=c(posR,totR);
-	m[,2]=c(posT,totT);
-	
-	F=fisher.test(m,alternative="greater")
-	Fpv=F$p.value
-	Fodds=F$estimate
-
-	string=paste(r,posR,posT,Fpv,Fodds,sep="\t")
-	if (Fpv<= FpvalB && Fodds!=Inf && Fodds>=4 && Fodds>FoddsB)
-	{
-		FoddsB=	Fodds
-		FpvalB= Fpv
-		Fstring= string
-	}
-}
-
-cat(Fstring)