Mercurial > repos > elixir-it > vep86_vcf2maf

comparison vep_unico.xml @ 4:e82c4e48ecd7 draft default tip

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author elixir-it
date Thu, 14 Nov 2019 08:54:04 +0000
parents ca1e48c52db9
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3:ca1e48c52db9 4:e82c4e48ecd7
10 </macros> 10 </macros>
11 <requirements> 11 <requirements>
12 <requirement type="package" version="86">variant-effect-predictor</requirement> 12 <requirement type="package" version="86">variant-effect-predictor</requirement>
13 <requirement type="package" version="1.3.1">samtools</requirement> 13 <requirement type="package" version="1.3.1">samtools</requirement>
14 <requirement type="package" version="1.0" >openssl</requirement> 14 <requirement type="package" version="1.0" >openssl</requirement>
15 <requirement type="package" version="1.7.2">perl-bioperl</requirement>
15 </requirements> 16 </requirements>
16 <command><![CDATA[ 17 <command><![CDATA[
17 #if str($veptools.veptoolsselect) =="downloadcache" 18 #if str($veptools.veptoolsselect) =="downloadcache"
18 19
19 cd \$CONDA_PREFIX && [[ -d vep_cache ]] || mkdir vep_cache ; 20 cd \$CONDA_PREFIX && [[ -d vep_cache ]] || mkdir vep_cache ;