Mercurial > repos > elixir-it > covacs_select_filtration

comparison covacs_Select_Filtration.xml @ 2:5058867ac48f draft default tip

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author elixir-it
date Wed, 02 Oct 2019 04:31:08 -0400
parents 6d8aa1176a94
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1:3a37867409fe 2:5058867ac48f
6 <requirement type="package" version="3.8" >gatk</requirement> 6 <requirement type="package" version="3.8" >gatk</requirement>
7 </requirements> 7 </requirements>
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 ### call the .sh to untar the package 10 ### call the .sh to untar the package
11 sh $__tool_directory__/mv_untar_gatk.sh && 11 bash $__tool_directory__/mv_untar_gatk.sh &> $log &&
12 12
13 ##sym link to run GATK 13 ##sym link to run GATK
14 14
15 ln -s $input1 input1.vcf && 15 ln -s $input1 input1.vcf &&
16 16