Mercurial > repos > elixir-it > covacs_mpileup
comparison covacs_macros.xml @ 0:bf16e5399eb8 draft
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| author | elixir-it |
|---|---|
| date | Fri, 09 Nov 2018 06:02:52 -0500 |
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| -1:000000000000 | 0:bf16e5399eb8 |
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| 1 <macros> | |
| 2 <macro name="reference_loc"> | |
| 3 <conditional name="reference_source"> | |
| 4 <param name="reference_source_selector" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options. See `Indexes` section of help below"> | |
| 5 <option value="cached">Use a built-in genome index</option> | |
| 6 <option value="history">Use a genome from history and build index</option> | |
| 7 </param> | |
| 8 <when value="cached"> | |
| 9 <param name="ref_file" type="select" label="Using reference genome" help="Select genome from the list"> | |
| 10 <options from_data_table="covacs_gatk_indexes"> | |
| 11 <filter type="sort_by" column="2" /> | |
| 12 <validator type="no_options" message="No indexes are available" /> | |
| 13 </options> | |
| 14 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> | |
| 15 </param> | |
| 16 </when> | |
| 17 <when value="history"> | |
| 18 <param name="ref_file_h" type="data" format="fasta" label="Use the following dataset as the reference sequence" help="You can upload a FASTA sequence to the history and use it as reference" /> | |
| 19 </when> | |
| 20 </conditional> | |
| 21 </macro> | |
| 22 </macros> |