<?xml version="1.0"?>
<tool_dependency>
    <package name="R_3_0_2" version="3.0.2">
		<repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="DESeq2biomaRt" version="1.0">
		<install version="1.0">
			<actions>
                <action type="set_environment_for_install">
					<repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
						<package name="R_3_0_2" version="3.0.2" />
					</repository> 
				</action>
                <action type="shell_command">R CMD BATCH source("http://bioconductor.org/biocLite.R")</action>
                <action type="shell_command">R CMD BATCH biocLite()</action>
                <action type="shell_command">R CMD BATCH biocLite("DESeq2")</action>
                <action type="shell_command">R CMD BATCH biocLite("biomaRt")</action>
                <action type="shell_command">R CMD BATCH install.packages("plyr")</action>
				<!--<action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action>-->
				<!--<action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>-->
			</actions> 
       </install> 
     <readme>
     </readme> 
   </package> 
</tool_dependency>