Mercurial > repos > eganrol > rnaseqdataannotation

comparison RNAseqDataAnnotation/tool_dependencies.xml @ 24:ac972dc39b63 draft

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author eganrol
date Thu, 20 Nov 2014 05:35:12 -0500
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23:0b61c45a57db 24:ac972dc39b63
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R_3_0_2" version="3.0.2">
4 <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="testtoolshed.g2.bx.psu.edu"/>
5 </package>
6 <package name="DESeq2biomaRt" version="1.0">
7 <install version="1.0">
8 <actions>
9 <action type="set_environment_for_install">
10 <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="testtoolshed.g2.bx.psu.edu">
11 <package name="R_3_0_2" version="3.0.2"/>
12 </repository>
13 </action>
14 <action type="shell_command">R CMD BATCH $INSTALL_DIR/DESeq2biomaRt.R</action>
15 <!--<action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action>-->
16 <!--<action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>-->
17 </actions>
18 </install>
19 <readme>
20 </readme>
21 </package>
22 </tool_dependency>