Mercurial > repos > ecology > vigiechiro_idvalid

comparison IdValidTidyen.xml @ 1:1a77241a9fab draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit 7ef0e58cbcbf41088e359f00b6c86504c773c271
author ecology
date Fri, 26 Apr 2019 12:15:41 -0400
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0:aa3afb770148 1:1a77241a9fab
1 <tool id="vigiechiro_idvalid" name="Tadarida identifications validation" version="@VERSION@">
2 <description>Integrate identifications from animal detection on acoustic recordings</description>
3 <macros>
4 <import>vigiechiro_macros.xml</import>
5 </macros>
6 <expand macro="vigiechiro_requirements"/>
7 <command detect_errors="exit_code"><![CDATA[
8 Rscript '$__tool_directory__/IdValidTidy.R'
9 '$inputfile'
10 '$output'
11 ]]>
12 </command>
13 <inputs>
14 <param name="inputfile" type="data" format="tabular" label="Corrected observation file" help="Use output file from Tadarida data clean : a sampling session file corrected."/>
15 </inputs>
16 <outputs>
17 <data name="output" format="tabular" from_work_dir="IdValidTidy.tabular" label="${tool.name} on ${on_string}"/>
18 </outputs>
19 <tests>
20 <test>
21 <param name="inputfile" value="output_tidy.tabular"/>
22 <output name="output" file="IdValidTidy.tabular"/>
23 </test>
24 </tests>
25 <help><![CDATA[
26 .. class:: infomark
27
28 =====================================
29 Tadarida identifications integration
30 =====================================
31
32 **What it does**
33
34 This tool allows to integrate identifications made by observers and validators and will provide an input for synthesis of participations.
35
36
37 **Arguments**
38
39 - The input is a tabular file, output from the tool Tadarida data cleaner.
40 - The output is a single tabular file with validated Ids
41 ]]></help>
42 <expand macro="vigiechiro_bibref" />
43 </tool>